Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24140 186 / 3e-56 Matrixin family protein (.1) AT1G59970 184 / 2e-55 Matrixin family protein (.1) AT1G70170 178 / 3e-53 MMP matrix metalloproteinase (.1) AT4G16640 146 / 3e-41 Matrixin family protein (.1) AT2G45040 124 / 7e-33 Matrixin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039464 [exp] 363 / 6e-127 AT1G24140 224 / 3e-71 Matrixin family protein (.1) Lus10005605 [exp] 359 / 3e-125 AT1G24140 223 / 9e-71 Matrixin family protein (.1) Lus10014512 [exp] 222 / 4e-71 AT1G59970 221 / 6e-70 Matrixin family protein (.1) Lus10032175 [exp] 221 / 9e-71 AT1G59970 224 / 3e-71 Matrixin family protein (.1) Lus10030662 [exp] 163 / 2e-47 AT1G59970 338 / 9e-115 Matrixin family protein (.1) Lus10004728 [exp] 143 / 8e-40 AT4G16640 350 / 2e-119 Matrixin family protein (.1) Lus10028955 [exp] 139 / 3e-38 AT4G16640 360 / 3e-123 Matrixin family protein (.1) Lus10007478 [exp] 137 / 2e-37 AT4G16640 345 / 2e-117 Matrixin family protein (.1) Lus10041294 [exp] 124 / 4e-33 AT1G59970 177 / 3e-53 Matrixin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G027700 [exp] 233 / 4e-75 AT1G59970 219 / 5e-69 Matrixin family protein (.1) Potri.008G027975 [exp] 226 / 2e-72 AT1G59970 216 / 4e-68 Matrixin family protein (.1) Potri.008G027500 [exp] 216 / 1e-68 AT1G59970 219 / 2e-69 Matrixin family protein (.1) Potri.013G033200 [exp] 209 / 6e-66 AT1G24140 246 / 2e-79 Matrixin family protein (.1) Potri.008G027600 [exp] 206 / 5e-65 AT1G59970 213 / 8e-67 Matrixin family protein (.1) Potri.013G100400 [exp] 196 / 6e-61 AT1G59970 247 / 4e-80 Matrixin family protein (.1) Potri.012G104600 [exp] 195 / 6e-60 AT1G24140 393 / 5e-136 Matrixin family protein (.1) Potri.019G073400 [exp] 192 / 2e-59 AT1G70170 215 / 2e-67 matrix metalloproteinase (.1) Potri.008G027900 [exp] 187 / 1e-57 AT1G59970 192 / 9e-59 Matrixin family protein (.1) Potri.019G073800 [exp] 187 / 2e-57 AT1G70170 223 / 1e-70 matrix metalloproteinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0244 [flax] [poplar] PGBD PF01471 [flax] [poplar] PG_binding_1 Putative peptidoglycan binding domain CL0126 [flax] [poplar] Peptidase_MA PF00413 [flax] [poplar] Peptidase_M10 Matrixin
Representative CDS sequence Show only first row Show all	>Lus10035221 pacid=23162385 polypeptide=Lus10035221 locus=Lus10035221.g ID=Lus10035221.BGIv1.0 annot-version=v1.0 ATGGCAGTGCTATACAATGTTTGCTTCCTCCTCCTCCTCCTCCTCTTCCCTCTACTTTCCCAATCTCACACGTTAACAAAATCCTCATCATCAGTTGCCT TCCTCCAACACCTCAAAGGTTGTCACAAGGGCGACAACCTCAAAGACATTTCCAAACTCAAACAATACCTCGAGAAATTCGGATACTTGGACTACAAAAA CGCTCCAAAGTCCAACCACTCCAACGACAACTACTTCGACCACCTCCTCGAGAAAGCCGTCAAAACTTACCAGGCCAACTTCCATTTGAACGATACCGGA GCCCTTGACTCCGGCACTGTGGCCACTATGATGTCCCCACGTTGCGGCGTGGCTGACATTGTCAATGGTACAAACCGGATGCACAGAACCCGCCACGGCC ACCATCCCCATGGGCTTCGCACAGTGTCTCATTACAGCTTCTTCCCAAGGAGCCCTAAGTGGTCGAAGACGAGGCTCACTTATGGGTTCCTCGCTGGGAC CCCGGCTGCAGCTGTGGACCCCGTGTCGAAAGCTTTCTTGACATGGTCCCAGAACTCGCACTTCACGTTCGCGAGGGCAAACGGAAACGGTAGGCCTGAT TTGACCATTGGATTCTTTCAAAGGGACCACGGGGACGGGGAACCTTTCGATGGGCCAGGTCGCACCATCGCTCATGCGTTTGCACCGGAGATTGGCATGT TTCACTACGATGCGGACGAGACATACACAACGGGAGTTGCGCCGGGCGCGTTCGACTATGAGACGGTCGCCCTACACGAAATCGGGCATCTTCTAGGGCT TCATCATAGCACCATCGAGGGAGCAATTATGTACCCGAAGCTTCCCGACGGAGCTACCAAGGGGCTCCACCAGGATGATATTCGAGGCATTAAGGATTTG TATAATGTTTAA
AA sequence Show only first row Show all	>Lus10035221 pacid=23162385 polypeptide=Lus10035221 locus=Lus10035221.g ID=Lus10035221.BGIv1.0 annot-version=v1.0 MAVLYNVCFLLLLLLFPLLSQSHTLTKSSSSVAFLQHLKGCHKGDNLKDISKLKQYLEKFGYLDYKNAPKSNHSNDNYFDHLLEKAVKTYQANFHLNDTG ALDSGTVATMMSPRCGVADIVNGTNRMHRTRHGHHPHGLRTVSHYSFFPRSPKWSKTRLTYGFLAGTPAAAVDPVSKAFLTWSQNSHFTFARANGNGRPD LTIGFFQRDHGDGEPFDGPGRTIAHAFAPEIGMFHYDADETYTTGVAPGAFDYETVALHEIGHLLGLHHSTIEGAIMYPKLPDGATKGLHQDDIRGIKDL YNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24140			Matrixin family protein (.1)		Lus10035221 [exp]	0	1
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10015286 [exp]	1.0	0.9713
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10010864 [exp]	2.8	0.9569
AT3G57260		AtPR2, PR-2, PR...	PATHOGENESIS-RELATED PROTEIN 2...		Lus10027860 [exp]	4.9	0.9566
AT5G10760			Eukaryotic aspartyl protease f...		Lus10026905 [exp]	4.9	0.9476
AT1G10340			Ankyrin repeat family protein ...		Lus10038608 [exp]	7.1	0.9215
AT1G24140			Matrixin family protein (.1)		Lus10005605 [exp]	7.1	0.9400
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10025410 [exp]	8.4	0.9267
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10024366 [exp]	8.5	0.9393
AT1G24140			Matrixin family protein (.1)		Lus10039464 [exp]	9.4	0.9260
AT2G41810			Protein of unknown function, D...		Lus10035451 [exp]	9.8	0.8236

Compare expression of checked genes

Lus10035221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.