Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57000 221 / 2e-71 nucleolar essential protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032054 [exp] 462 / 3e-167 AT3G57000 239 / 2e-78 nucleolar essential protein-related (.1) Lus10028959 [exp] 219 / 1e-70 AT3G57000 352 / 3e-122 nucleolar essential protein-related (.1) Lus10007483 [exp] 218 / 3e-70 AT3G57000 347 / 1e-120 nucleolar essential protein-related (.1) Lus10035220 [exp] 149 / 2e-43 AT3G57000 165 / 3e-49 nucleolar essential protein-related (.1) Lus10032053 [exp] 144 / 2e-41 AT3G57000 163 / 1e-48 nucleolar essential protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G040600 [exp] 241 / 1e-79 AT3G57000 349 / 1e-121 nucleolar essential protein-related (.1) Potri.016G037500 [exp] 239 / 1e-78 AT3G57000 338 / 4e-117 nucleolar essential protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0098 [flax] [poplar] SPOUT PF03587 [flax] [poplar] EMG1 EMG1/NEP1 methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10035222 pacid=23162581 polypeptide=Lus10035222 locus=Lus10035222.g ID=Lus10035222.BGIv1.0 annot-version=v1.0 ATGGGGATGAAGCGAAAGAAGGGAGAACGAAACGAGGGGGGAGAAGAGAAGAAAAAAGTTTCATGCTTGAAACAAGCAAGTAATGAGCCAAACCCATCCG AAGGCGAGGTGGCAATAGATCTCCCTGGGATTGAATTAGCACCATCCCTTCCGAACTCCAAAGCTGGGGTGATTTTTGTTCTTGAGAAGGCTTCCTTGGT CCTTGCTAATGTTGGACGAAAGTATCGGATTCTAAACGCAAATGAGCATTCCGACTATTTGCGGAAGAAGAACATGGATCCATACAAATACAGACCTGAT ATCGTTCACGAGGCTCTTGTTGGAATTATGGATAGCCGACTCCGTATGGCTGGTAAGTTAAAGGCAGTGTACATCAGGACAGATGAAGGGGTTTTGATTA AAGTCGAGCCTAATGCTCGAATTCCAAGAACGTTAGAAGAATTCTGTGATATGATGGCTCAGTTGTTACAGAAATTGAGCATCAAAGCCAAAGGGAAGGG TGGGAAATTGTTGCGGCTGGTTCAGAATCCAGTAACTCAGTACTTTCCTGTAAACTCCACTAAAATAGGTCTCTCATTTGTTTCGCCTAAGGCACTCCCC ATAGAGCAGTACGTCACTGGTGCCGACACGAACACTGACCTCATTTTTGTGGTTGGTTCAATGGCCCATGGGAAAATTGATTGTGATTACCTTGATGATC TTGTTGCAGTTTCTAGCTACCCATTGACTGCTGCTGCATGTTTGAGAGACATATCCATTGCACTGGAGACCAAATGGAAAATTCACTGA
AA sequence Show only first row Show all	>Lus10035222 pacid=23162581 polypeptide=Lus10035222 locus=Lus10035222.g ID=Lus10035222.BGIv1.0 annot-version=v1.0 MGMKRKKGERNEGGEEKKKVSCLKQASNEPNPSEGEVAIDLPGIELAPSLPNSKAGVIFVLEKASLVLANVGRKYRILNANEHSDYLRKKNMDPYKYRPD IVHEALVGIMDSRLRMAGKLKAVYIRTDEGVLIKVEPNARIPRTLEEFCDMMAQLLQKLSIKAKGKGGKLLRLVQNPVTQYFPVNSTKIGLSFVSPKALP IEQYVTGADTNTDLIFVVGSMAHGKIDCDYLDDLVAVSSYPLTAAACLRDISIALETKWKIH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57000			nucleolar essential protein-re...		Lus10035222 [exp]	0	1
AT1G04210			Leucine-rich repeat protein ki...		Lus10021898 [exp]	3.2	0.8507
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10027914 [exp]	4.1	0.7855
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Lus10004278 [exp]	4.2	0.8264
AT5G15550			Transducin/WD40 repeat-like su...		Lus10032344 [exp]	8.1	0.8275
AT1G66310			F-box/RNI-like/FBD-like domain...		Lus10034161 [exp]	8.5	0.8042
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Lus10009708 [exp]	11.2	0.8006
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10009158 [exp]	13.0	0.7975
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10041963 [exp]	13.4	0.8121
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10032458 [exp]	13.7	0.8193
AT3G57000			nucleolar essential protein-re...		Lus10035220 [exp]	15.5	0.8130

Compare expression of checked genes

Lus10035222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.