Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53970 169 / 2e-50 proteasome inhibitor-related (.1.2) AT1G48530 116 / 1e-31 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032056 [exp] 225 / 4e-73 AT3G53970 143 / 2e-41 proteasome inhibitor-related (.1.2) Lus10032055 [exp] 62 / 1e-12 AT3G53970 68 / 1e-15 proteasome inhibitor-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G103800 [exp] 163 / 3e-48 AT3G53970 206 / 2e-65 proteasome inhibitor-related (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08577 [flax] [poplar] PI31_Prot_C PI31 proteasome regulator PF11566 [flax] [poplar] PI31_Prot_N PI31 proteasome regulator N-terminal
Representative CDS sequence Show only first row Show all	>Lus10035223 pacid=23162451 polypeptide=Lus10035223 locus=Lus10035223.g ID=Lus10035223.BGIv1.0 annot-version=v1.0 ATGGCGACAGACAAGTCGGTGATCGCCGTGATTCGAGGAGCAAGACCTTCGTTTAAGAACAATCACGACAAGGCTGCTTTCGCCGTTCACGCTTCCTTCC TCGCCGCCGGTTACATGCTCACTGCCACCGGGCCTGCCGCCATGCCCGAGTTCTCTCTTCTACCTCCGCAGGTTGGAATTGACGGGTGGAACGATTTGGA CGGAGAGTATGGATTCGTATACCTGAACCCTGAAGAGGGAGGCAAGAAAGTTCTGGTTAAGTGTTTGGCGATGAATGATAAGTTGATGGTTAGTGCTTTG CCTGCTGACGAAGGTTCCAAATCTGCTGCTGAGCCTGTTCATCTAGAAATTAGTGTTAACGACTATGCGGGCGAGGATGGGGGATCAAATTACTCTCAGC AGTTCAAGAACTTTGATAAGCTGATTACGAGTCTCAACACTGAGGTCTTGTCTAAACTAGGAAGTTCTTCCCAGTCCGGCTCGTCCAGTAGATCAACCAG CCATCTGAGTGACATAGATAGGCATGTCCAGAATGAACCTCACAGTGGGCAGCCTGAACAGGAGAATCCTCGGTTTCATCCCTCGGGAGTTATTGTTCCG CCCATTCCTCCATTCCACTTTGATGATACATTTCCTGGGCCTGGTGCTGGAATTTACCCTGGCAGGGGTGGTATTGGTGGTGATGGCAGCATGTTGCTAG GGCCTGATGACCCTAGATGGTTCGGTGGGGATAGTGAAGGTCTTCGTTTCCCTGGAGCACAACCAGGCGTTCCTCCTGGTGCTCGTTTCGATCCATACGG ACCTCCTGGGGTTCCAGGTTTTGAGCCTGGTCGGTTTATTAGGGGTCCAGGCAGGGGTGGAAGAGGAAGGAATCCACACCCGGACATGGAGCAGCCTGGA AGTGGTTTTGATGATTACATTCATCGTATGTAG
AA sequence Show only first row Show all	>Lus10035223 pacid=23162451 polypeptide=Lus10035223 locus=Lus10035223.g ID=Lus10035223.BGIv1.0 annot-version=v1.0 MATDKSVIAVIRGARPSFKNNHDKAAFAVHASFLAAGYMLTATGPAAMPEFSLLPPQVGIDGWNDLDGEYGFVYLNPEEGGKKVLVKCLAMNDKLMVSAL PADEGSKSAAEPVHLEISVNDYAGEDGGSNYSQQFKNFDKLITSLNTEVLSKLGSSSQSGSSSRSTSHLSDIDRHVQNEPHSGQPEQENPRFHPSGVIVP PIPPFHFDDTFPGPGAGIYPGRGGIGGDGSMLLGPDDPRWFGGDSEGLRFPGAQPGVPPGARFDPYGPPGVPGFEPGRFIRGPGRGGRGRNPHPDMEQPG SGFDDYIHRM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53970			proteasome inhibitor-related (...		Lus10035223 [exp]	0	1
AT2G28310			Protein of unknown function (D...		Lus10000145 [exp]	2.4	0.7243
					Lus10009611 [exp]	3.5	0.7202
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10029674 [exp]	6.6	0.7386
AT1G12060		ATBAG5	BCL-2-associated athanogene 5 ...		Lus10010486 [exp]	15.2	0.7267
AT5G54855			Pollen Ole e 1 allergen and ex...		Lus10019622 [exp]	18.2	0.7006
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10041300 [exp]	21.4	0.6826
AT5G10050			NAD(P)-binding Rossmann-fold s...		Lus10004925 [exp]	28.6	0.6956
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10041217 [exp]	29.1	0.5902
AT5G64230			unknown protein		Lus10033177 [exp]	34.9	0.7011
					Lus10031351 [exp]	43.1	0.6977

Compare expression of checked genes

Lus10035223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.