Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01820 233 / 1e-76 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G37250 155 / 5e-46 ADK, ATPADK1 adenosine kinase (.1) AT2G39270 139 / 2e-39 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G50370 72 / 9e-15 Adenylate kinase family protein (.1) AT4G25280 70 / 6e-14 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G63400 69 / 1e-13 ADK1 adenylate kinase 1 (.1.2) AT3G60180 57 / 1e-09 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G35170 57 / 5e-09 adenylate kinase family protein (.1.2) AT5G26667 55 / 5e-09 PYR6 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT5G47840 47 / 5e-06 AMK2 adenosine monophosphate kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032057 [exp] 439 / 2e-157 AT3G01820 244 / 5e-81 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10022342 [exp] 327 / 3e-113 AT3G01820 255 / 4e-85 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10001984 [exp] 156 / 4e-46 AT2G37250 391 / 4e-138 adenosine kinase (.1) Lus10030296 [exp] 156 / 4e-46 AT2G37250 395 / 1e-139 adenosine kinase (.1) Lus10040358 [exp] 155 / 1e-45 AT2G37250 405 / 1e-143 adenosine kinase (.1) Lus10023476 [exp] 154 / 3e-45 AT2G37250 407 / 2e-144 adenosine kinase (.1) Lus10031714 [exp] 67 / 3e-12 AT4G25270 672 / 0.0 organelle transcript processing 70, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016757 [exp] 64 / 6e-12 AT5G63400 416 / 2e-149 adenylate kinase 1 (.1.2) Lus10022453 [exp] 64 / 1e-11 AT5G63400 411 / 2e-147 adenylate kinase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G333100 [exp] 276 / 2e-93 AT3G01820 249 / 8e-83 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G093200 [exp] 239 / 6e-79 AT3G01820 227 / 3e-74 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G215300 [exp] 159 / 2e-47 AT2G37250 382 / 2e-134 adenosine kinase (.1) Potri.008G046100 [exp] 153 / 5e-45 AT2G37250 377 / 1e-132 adenosine kinase (.1) Potri.012G095700 [exp] 106 / 5e-29 AT3G01820 90 / 8e-23 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G095300 [exp] 68 / 3e-13 AT5G63400 419 / 1e-150 adenylate kinase 1 (.1.2) Potri.015G129000 [exp] 64 / 9e-12 AT4G25280 301 / 6e-104 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G092800 [exp] 62 / 3e-11 AT5G63400 425 / 6e-153 adenylate kinase 1 (.1.2) Potri.018G113400 [exp] 56 / 7e-09 AT5G35170 838 / 0.0 adenylate kinase family protein (.1.2) Potri.019G078200 [exp] 55 / 1e-08 AT5G47840 332 / 8e-115 adenosine monophosphate kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00406 [flax] [poplar] ADK Adenylate kinase
Representative CDS sequence Show only first row Show all	>Lus10035224 pacid=23162479 polypeptide=Lus10035224 locus=Lus10035224.g ID=Lus10035224.BGIv1.0 annot-version=v1.0 ATGGGCGTAATTAGTCGAGCGGGGTTGGCTACAGCTCCCTCCATCCTCCGTCGCCTGGGGCTCCTCTCTGGAACCCGAACTTATGGATCGGCGGCAGCAG TCCAGTACCATTATTACGACGAAGAGGAGGAGGAGGAGACGCCGGAACCTTCTCCCTTGCGTCGGAGCCTTGCGACGGCTGTGTCCGGGTCGACGTTGGA GAGAGGAGTGCAGTGGGTGTTGATCGGGGATCCCGGAGCTAAGAAGCATATGTACGCCGAGAGACTCTCGAAGGTTCTACAAGTTCCTCACATTTCTATG GGGAATCTCCTTCGACAGGAGCTCAATCCTCGTTCTTCTCTTTACAAACATATATCAAATGCTGTGAACGAAGGGAAGCTTGTGCACGAGGAGGTAATCT TTGGGTTGCTTTCGGAGAGGCTTGAAGATGGATACTCTAAAGGGGAAAGCGGCTTCGTTTTGGATGGCATTCCCAGAACTAGATTGCAAGCTGAGATCCT TGATCAAATTGCTGACATTGATCTAGTGGTGAACTTCAAAACTTCCGAGCAGCGGCTGGTGAAAAGCAATTATGTTGGCATACGACATTCTGCAACTGCT AGCGGAATAAGCAATTCTTGGGATGAAAAGTCCCGCCTACATGCAGAAGAGGGCAAGGCATTGGAAGATTACTACAGAAAACAGAGAAAGCTTATCAATT TTCAAGTCGCAGGTGGACCAGGAGAGACCTGGCAGAGCTTGTTGGCTACTTTACATCTCAAGCAAGCCAATGCCATTCTTCTCTCTTCAACGAAACTCGC TGTTTGA
AA sequence Show only first row Show all	>Lus10035224 pacid=23162479 polypeptide=Lus10035224 locus=Lus10035224.g ID=Lus10035224.BGIv1.0 annot-version=v1.0 MGVISRAGLATAPSILRRLGLLSGTRTYGSAAAVQYHYYDEEEEEETPEPSPLRRSLATAVSGSTLERGVQWVLIGDPGAKKHMYAERLSKVLQVPHISM GNLLRQELNPRSSLYKHISNAVNEGKLVHEEVIFGLLSERLEDGYSKGESGFVLDGIPRTRLQAEILDQIADIDLVVNFKTSEQRLVKSNYVGIRHSATA SGISNSWDEKSRLHAEEGKALEDYYRKQRKLINFQVAGGPGETWQSLLATLHLKQANAILLSSTKLAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01820			P-loop containing nucleoside t...		Lus10035224 [exp]	0	1
AT3G01820			P-loop containing nucleoside t...		Lus10032057 [exp]	1.0	0.8528
AT5G60790		ABCF1, ATGCN1	ARABIDOPSIS THALIANA GENERAL C...		Lus10038681 [exp]	2.0	0.8516
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10037744 [exp]	6.0	0.8263
AT4G27460			Cystathionine beta-synthase (C...		Lus10018183 [exp]	6.6	0.7153
AT5G09450			Tetratricopeptide repeat (TPR)...		Lus10034221 [exp]	9.5	0.7513
AT4G31010			RNA-binding CRS1 / YhbY (CRM) ...		Lus10041383 [exp]	9.8	0.7405
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Lus10010507 [exp]	9.8	0.7555
AT4G27680			P-loop containing nucleoside t...		Lus10022361 [exp]	12.6	0.7511
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10037745 [exp]	13.0	0.8154
AT3G22980			Ribosomal protein S5/Elongatio...		Lus10004749 [exp]	18.8	0.7929

Compare expression of checked genes

Lus10035224 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.