Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14210 764 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G03770 493 / 2e-163 Leucine-rich repeat protein kinase family protein (.1.2) AT5G63410 426 / 4e-139 Leucine-rich repeat protein kinase family protein (.1) AT1G14390 314 / 7e-96 Leucine-rich repeat protein kinase family protein (.1) AT2G02780 287 / 9e-86 Leucine-rich repeat protein kinase family protein (.1) AT4G20140 204 / 1e-54 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 199 / 5e-53 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G07280 198 / 1e-52 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G28650 185 / 2e-48 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G79620 184 / 4e-48 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032058 [exp] 1397 / 0 AT5G14210 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032059 [exp] 1351 / 0 AT5G14210 870 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022340 [exp] 931 / 0 AT5G14210 876 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10041589 [exp] 688 / 0 AT5G14210 520 / 2e-176 Leucine-rich repeat protein kinase family protein (.1) Lus10020303 [exp] 466 / 3e-153 AT3G03770 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10005689 [exp] 447 / 4e-146 AT3G03770 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10033407 [exp] 427 / 2e-138 AT3G03770 666 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034873 [exp] 426 / 7e-138 AT3G03770 668 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10029659 [exp] 342 / 8e-108 AT5G63410 584 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G333300 [exp] 932 / 0 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G093100 [exp] 740 / 0 AT5G14210 681 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G095600 [exp] 723 / 0 AT5G14210 720 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G039000 [exp] 520 / 2e-174 AT3G03770 933 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G064300 [exp] 473 / 1e-155 AT3G03770 896 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.008G014300 [exp] 446 / 4e-146 AT3G03770 692 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G147700 [exp] 354 / 5e-111 AT1G14390 675 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G139000 [exp] 197 / 2e-52 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.015G141200 [exp] 191 / 3e-50 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G075000 [exp] 188 / 2e-49 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10035225 pacid=23162554 polypeptide=Lus10035225 locus=Lus10035225.g ID=Lus10035225.BGIv1.0 annot-version=v1.0 ATGGGGTGGTTAAACTGGTTGCTCCTGTTGTTTCTCTCCTGGGTTTACTTCTGTGTTTCACTTTCTCATGAGCTGCAAACCAACCAGGCTCAGTACCTAA TGCAACTGAGGAAGCATTTGGAGTACCCTCCGCAGTTGAATGCTTGGGAGAGCTACGATAACAATGGTGGTGACCTCTGCAACTTCTCATCCACTTCATT TCTGAGCATTCGCTGTGAAAACAATCTGGTTACAGAGCTCAAGATCATGGGAGGAGACAGGAAACTAATCAAGACTCTATCCGAGCCTTTCTCAATTGAT TCTTTGTTCACCACTTTGACAAGGCTGACCAGCTTGAAAGCTGTGTGCTTGGTGTCATTGGGGATTTGGGGGACGCTTCCTGATAAGATTCACCGGCTAC ATTCTCTGGAACTTCTAGACTTGAGCTCGAATTTCATTTTTGGTTCAGTTCCAGCTCAATTGTCAAGAATGGTTAATCTTACTACCTTGGTTCTTGATAG CAACTACTTCAATGGAACTGTGCCTAATTGGCTGGATTCTTTACCAAACCTCACTGTTTTGAGCTTGAAGAGTAACCGTTTTGAGGGCCAGTTTCCTTCT TCAGTTTACAGAATCAGAAGCTTAACTGATATTGCACTCTCCCACAACCAGCTCAGTGGGGAACTCCCTGATTTGACTGACTTGACCAATCTGCATGTAT TGGACTTGAGAGACAATGAATTTGAGTCTCACTTGCCTCTCATGCCAAAAGGGTTGGTCACTCTTCTCTTAAGCAACAATTCATTTTCAGGTGAAGTTCC AGCTCAGTTTGGACAGCTGAGCCAGCTGCAACACTTGGATTTGTCGTTGAATAATCTCAGTGGAACTCCTCCTTCTTCCTTGTTCTCTTTGCCAAACATA AGTTATCTGAACTTAGCATCCAACAAGCTAACCGGGTCGCTTCCAATTCATCTCAACTGTGGTTCCAAGCTTGGTTTTGTTGACATCTCCATGAACAAGT TAATTGGTGGACTTCCATCTTGTTTGGAGAGTAGTTCAAATAAGAGAGTGGTGAAATCTGGTGGGAATTGCTTATCCAGTGATGCACCAGATCAGCAGAA GGAGTCAGAGTGTACTAAAGATGCCAGAAAGGAGACCGGACATTCGAGGCTTAGATCAATTTGGATAATAATGGCTGTCATTGGTGGAACTCTTGTTGTT CTTATTTCAGTATTGGCCTGTGGGGTTATCTGCATTCGTAGAACATGTCGTCCTAGGAAAACGTTAGAAAACAATATAATCTCTAAGGCTATGGTGGATA ACAGTAATCATCATCATCCACCACCTACTGGTGTTTCATCAACAGTCCTGGCAAATGCAAGATTCATTTCAGAAACAGCCAAGCTAGGGTCACAAGCTGG TACTCCTGTATGTCGTGTGTTTTCCTTGGAAGAGCTTAAGGATGCTACAAAGAACTTTCATACCTCTTCTTTTATGGGTGAAGGCTCTTCTGGGAAGGTT TACAAAGGAAGATTGGAGAATGGTAACCTTATAGCCATACGATGCGTCGCTTTGTTCAAGAAACAGTCGATCCAAAACCTCAAAGTTAGACTGGATTTAC TATCCAAGCTTCACCATCCACATCTTGTAACTCTCTTAGGCCACTGTATTGACAGCAGTACTGGACTGGATGACAGCAACAAAGTCTTCCTTGTGTACGA ATATTTGCCCAACGGAAATTATCGTTTCCATTTAGCAGAAAATTACCCGGAGAAACCACTAAGATGGCCGGAAAGACTCGCAATTCTGATAGGTGTTGCC AAGGCTGTGCAGTTTCTGCATGCTGGTCTTGTTCCTGGGACATTCAAGAACCGACTGAAAACAAACAATATACTGCTTGACGAGCACCAGATTGCAAAGC TCAGTGACTATGAAATGCCCATCCTCACTGAAGACTTTGAAAAACTTGAGGCTAAGGGAGAGGGAACTAAGTCAAGAATAAACTTGGAGGATGATGTGTA CAACTTCGGGTTTATACTACTTGAATCACTTGTTGGGCCTATTGTGACTGGGAAAGGAGAAACCTTTCTGCTGAATGAAATGGCATCCTTCGGCAGCCAA GATGGTCGAAGAAGAATCGTGGACCCAATCATTCTAACTACATGCTCACAGGAGTCTCTTTCCATAATTGTTTCGATCACGACCAAATGCCTATCTCCCG ATTCTTCGCTTAGGCCTTCTTTCGAGGATGTACTCTGGAACTTGCAGTATGCAGCTCAGGTTCAGGCCACAGCTGATGCAGACCAGAGATCAGATTCAAC GTCATAA
AA sequence Show only first row Show all	>Lus10035225 pacid=23162554 polypeptide=Lus10035225 locus=Lus10035225.g ID=Lus10035225.BGIv1.0 annot-version=v1.0 MGWLNWLLLLFLSWVYFCVSLSHELQTNQAQYLMQLRKHLEYPPQLNAWESYDNNGGDLCNFSSTSFLSIRCENNLVTELKIMGGDRKLIKTLSEPFSID SLFTTLTRLTSLKAVCLVSLGIWGTLPDKIHRLHSLELLDLSSNFIFGSVPAQLSRMVNLTTLVLDSNYFNGTVPNWLDSLPNLTVLSLKSNRFEGQFPS SVYRIRSLTDIALSHNQLSGELPDLTDLTNLHVLDLRDNEFESHLPLMPKGLVTLLLSNNSFSGEVPAQFGQLSQLQHLDLSLNNLSGTPPSSLFSLPNI SYLNLASNKLTGSLPIHLNCGSKLGFVDISMNKLIGGLPSCLESSSNKRVVKSGGNCLSSDAPDQQKESECTKDARKETGHSRLRSIWIIMAVIGGTLVV LISVLACGVICIRRTCRPRKTLENNIISKAMVDNSNHHHPPPTGVSSTVLANARFISETAKLGSQAGTPVCRVFSLEELKDATKNFHTSSFMGEGSSGKV YKGRLENGNLIAIRCVALFKKQSIQNLKVRLDLLSKLHHPHLVTLLGHCIDSSTGLDDSNKVFLVYEYLPNGNYRFHLAENYPEKPLRWPERLAILIGVA KAVQFLHAGLVPGTFKNRLKTNNILLDEHQIAKLSDYEMPILTEDFEKLEAKGEGTKSRINLEDDVYNFGFILLESLVGPIVTGKGETFLLNEMASFGSQ DGRRRIVDPIILTTCSQESLSIIVSITTKCLSPDSSLRPSFEDVLWNLQYAAQVQATADADQRSDSTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14210			Leucine-rich repeat protein ki...		Lus10035225 [exp]	0	1
AT5G50150			Protein of Unknown Function (D...		Lus10027683 [exp]	1.4	0.8994
AT5G14210			Leucine-rich repeat protein ki...		Lus10032059 [exp]	2.4	0.8853
AT3G13000			Protein of unknown function, D...		Lus10034787 [exp]	4.2	0.8294
AT1G02410			cytochrome c oxidase assembly ...		Lus10017058 [exp]	4.9	0.8211
AT5G58160			actin binding (.1)		Lus10007447 [exp]	4.9	0.8457
AT5G14210			Leucine-rich repeat protein ki...		Lus10032058 [exp]	5.5	0.8636
AT1G63650	bHLH	EGL1, ATMYC-2, ...	ENHANCER OF GLABRA 3, basic he...		Lus10024631 [exp]	5.7	0.8731
AT5G50150			Protein of Unknown Function (D...		Lus10039949 [exp]	6.0	0.8795
AT3G48210			unknown protein		Lus10018093 [exp]	9.5	0.8287
AT1G54385			ARM repeat superfamily protein...		Lus10002627 [exp]	10.2	0.8299

Compare expression of checked genes

Lus10035225 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.