Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01800 320 / 8e-111 Ribosome recycling factor (.1) AT3G63190 99 / 2e-24 HFP108, AtcpRRF, RRF "ribosome recycling factor, chloroplast precursor", HIGH CHLOROPHYLL FLUORESCENCE AND PALE GREEN MUTANT 108, Arabidopsis thaliana chloroplast ribosome recycling factor, ribosome recycling factor, chloroplast precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032060 [exp] 437 / 1e-156 AT3G01800 372 / 4e-131 Ribosome recycling factor (.1) Lus10042587 [exp] 102 / 9e-26 AT3G63190 315 / 2e-108 "ribosome recycling factor, chloroplast precursor", HIGH CHLOROPHYLL FLUORESCENCE AND PALE GREEN MUTANT 108, Arabidopsis thaliana chloroplast ribosome recycling factor, ribosome recycling factor, chloroplast precursor (.1) Lus10022041 [exp] 88 / 3e-20 AT3G63190 291 / 9e-99 "ribosome recycling factor, chloroplast precursor", HIGH CHLOROPHYLL FLUORESCENCE AND PALE GREEN MUTANT 108, Arabidopsis thaliana chloroplast ribosome recycling factor, ribosome recycling factor, chloroplast precursor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G333700 [exp] 301 / 7e-103 AT3G01800 316 / 3e-109 Ribosome recycling factor (.1) Potri.002G052400 [exp] 110 / 1e-28 AT3G63190 308 / 2e-105 "ribosome recycling factor, chloroplast precursor", HIGH CHLOROPHYLL FLUORESCENCE AND PALE GREEN MUTANT 108, Arabidopsis thaliana chloroplast ribosome recycling factor, ribosome recycling factor, chloroplast precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01765 [flax] [poplar] RRF Ribosome recycling factor
Representative CDS sequence Show only first row Show all	>Lus10035226 pacid=23162347 polypeptide=Lus10035226 locus=Lus10035226.g ID=Lus10035226.BGIv1.0 annot-version=v1.0 ATGGCGATGTATCTGAGACGGGCGGTCTCGTCTCGAAGCTCAATTGGTTTGATTCGAGGAATCTGGTCTCGTGAAGTCACCGAAGTTCGGAGGAGTTCCT CTCAGGGTCTCTTCTTCTTCTCTCGGGATTTTGTATGCGGGACGAAAGAGGTACCAACTTCGCCGCCAAACTTTGGCGGCTATTTCAAGGAGACTCGTCG TGGTTTCGCCAAGGGGAAACGATCAAAGGATGATTCTGGTGGAGGGACAGCTGAAGTTGTGGGAGACATTGGACCTACTGTTAAGGCAAGTGCTGCCTAT CAAATGGATGCAGCAATAGATGCATTATCAAGAGAACTAACCAAGTTAAGAACTGGCAGGGCATCTCCAGGAATGCTTGACCACATCATTGTGGAAACCG GAGGTGTGAAAATGCCTCTCGGTCGGCTAGCTGTTGTTTCTGTCATGGACCCGAAAACCTTGTCTGTGAATCCTTATGATCCTAGTACAATTAAAGAACT AGAGAAAGCAATTGTTTCATCTCCGTTGGGGCTAAATCCCGTCTTGGAAGATGAACGACTGATTGCATCCATTCCACCATTAACCAAAGAGCATATGCAG GCCATATGTAAGGTTGTTGCTAAGTCAAGCGAAGTTGTTAAACAAAGCATAAGAAGAGCTCGCCAGAAGGCCTTGGATACAATTAAAAAAGGTGGTTCGA GTGTGCCTAAAGATGGAGCCAAGAGATTGGAGAAAGAGATCGATGAGATGACAAAGAAATTCGTGAAGTCAGCAGAGGATATGTGTAATGTGAAAGAGAA GGAAATCACTCAAGGCTAG
AA sequence Show only first row Show all	>Lus10035226 pacid=23162347 polypeptide=Lus10035226 locus=Lus10035226.g ID=Lus10035226.BGIv1.0 annot-version=v1.0 MAMYLRRAVSSRSSIGLIRGIWSREVTEVRRSSSQGLFFFSRDFVCGTKEVPTSPPNFGGYFKETRRGFAKGKRSKDDSGGGTAEVVGDIGPTVKASAAY QMDAAIDALSRELTKLRTGRASPGMLDHIIVETGGVKMPLGRLAVVSVMDPKTLSVNPYDPSTIKELEKAIVSSPLGLNPVLEDERLIASIPPLTKEHMQ AICKVVAKSSEVVKQSIRRARQKALDTIKKGGSSVPKDGAKRLEKEIDEMTKKFVKSAEDMCNVKEKEITQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01800			Ribosome recycling factor (.1)		Lus10035226 [exp]	0	1
AT5G25800			Polynucleotidyl transferase, r...		Lus10042779 [exp]	3.7	0.8491
AT1G11780			oxidoreductase, 2OG-Fe(II) oxy...		Lus10037023 [exp]	11.2	0.7301
AT5G45760			Transducin/WD40 repeat-like su...		Lus10007297 [exp]	12.7	0.7830
AT3G52270			Transcription initiation facto...		Lus10030963 [exp]	14.1	0.7973
AT1G73020			unknown protein		Lus10009732 [exp]	14.9	0.8211
AT1G19340			Methyltransferase MT-A70 famil...		Lus10032722 [exp]	15.1	0.8196
AT5G59440		ATTMPK.2, ATTMP...	ZEUS1, ARABIDOPSIS THALIANA TH...		Lus10027801 [exp]	17.8	0.8133
AT5G50840			unknown protein		Lus10040383 [exp]	18.7	0.8167
AT4G01940		ATCNFU1, NFU1	NFU domain protein 1 (.1)		Lus10025018 [exp]	20.0	0.8003
AT1G65440		GTB1	global transcription factor gr...		Lus10013071 [exp]	21.2	0.7929

Compare expression of checked genes

Lus10035226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.