Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67850 446 / 3e-157 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT3G27470 438 / 3e-154 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G08040 437 / 5e-154 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT2G28310 431 / 7e-152 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) AT1G13000 425 / 4e-149 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT3G26440 417 / 5e-146 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) AT1G24570 407 / 2e-142 Protein of unknown function (DUF707) (.1) AT4G12840 259 / 5e-84 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT4G18530 237 / 1e-75 Protein of unknown function (DUF707) (.1) AT1G61240 234 / 6e-74 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032090 [exp] 557 / 0 AT3G27470 564 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10003659 [exp] 487 / 1e-173 AT3G27470 563 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10022287 [exp] 469 / 6e-166 AT3G27470 548 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10011414 [exp] 459 / 1e-162 AT1G67850 611 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10006472 [exp] 458 / 2e-162 AT1G67850 598 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10016095 [exp] 437 / 5e-154 AT2G28310 604 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Lus10021463 [exp] 437 / 7e-154 AT2G28310 594 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Lus10041316 [exp] 428 / 3e-150 AT2G28310 590 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Lus10037396 [exp] 429 / 7e-140 AT5G60700 1181 / 0.0 glycosyltransferase family protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G185600 [exp] 463 / 3e-164 AT1G67850 610 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.017G065200 [exp] 463 / 6e-164 AT3G27470 605 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.010G047200 [exp] 461 / 3e-163 AT1G67850 581 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.009G011000 [exp] 431 / 5e-152 AT2G28310 608 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Potri.019G053000 [exp] 254 / 3e-82 AT4G18530 444 / 4e-156 Protein of unknown function (DUF707) (.1) Potri.011G045300 [exp] 249 / 6e-80 AT1G61240 534 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.014G175800 [exp] 248 / 6e-80 AT4G12840 482 / 1e-170 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.004G036800 [exp] 242 / 3e-77 AT1G61240 535 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.004G227700 [exp] 239 / 1e-76 AT4G18530 466 / 1e-164 Protein of unknown function (DUF707) (.1) Potri.003G003100 [exp] 232 / 1e-73 AT4G18530 480 / 4e-170 Protein of unknown function (DUF707) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05212 [flax] [poplar] DUF707 Protein of unknown function (DUF707)
Representative CDS sequence Show only first row Show all	>Lus10035229 pacid=23162591 polypeptide=Lus10035229 locus=Lus10035229.g ID=Lus10035229.BGIv1.0 annot-version=v1.0 ATGGGACCAAGGTGCTATGCTGAAGATCTAGACCCTCTAGTTATGTCAATGATCAATGGTCATATCATTGTTTTTATGAATGTAAGCTTTAACTCGAAAC TAATGCAGATTTGGGGCGATGACAATCCTCGTGGTGCTGAGAGATTACCGCCTGGTATAGTAGCTGCTGAATCGGACTTGTATCTTCAACGACTGTGGGG TATGCCTGCTGAGGATTTAACGGTCAAACAGAAGTATCTCGTCACATTTACTGTTGGTTATAAACAGAGAGATAACATAAATGCAGCAGTTGAAAAGTTC TCGGAGAACTTCACCGTACTTTTGTTTCACTACGATGGCCGCATAACAGAATGGGACGAGTTCGAGTGGTCTAAGAGAGCGATCCACGTGAGTGCTCCGA AGCAAACAAAGTGGTGGTTCGCGAAGCGGTTTCTACATCCTGATATCATTGCAGCATATGACTACGTTTTCATGTGGGATGAAGATCTCGGCCTCGAACA TTTCGATGCAGAGGAGTACATCAGACTGGTAAGGAAACATGGGTTGGAAATTTCTCAGCCTGGTTTAGACCCGGAAAAAGGGACAACCTGGGCGATGACG AAGAGAAGAGGTGATACTGAAGTTCACAACTTCGTGGAGATCATGGCACCTTTGTTTTCTAGAGATGCATGGCGCTGCGTCTGGCATATGATTCAGAATG ATTTGGTTCATGGATGGGGTCTCGACTTTGTTTTGCGGAAATGTGTCGAGCCTGCCCATGAGAAGATAGGAGTTGTAGATGCTCAGTGGATTGTTCATCT CGGTGTTCCTTCGCTCGGAAACCAGGGAGAAGGTGGCTTTGGGAGAGCGCCATGGCAAGGGGTGAGGGATAGGTGTCAAAAGGAATGGAGGATGTTTTAT CAAAGGTTTTCTCAAGCACAGAAAGCGTATTTCTGGATGCTTAGACTTCGTCGGAGGGACAATAGCAATGATGATAAGAGTAATACAACCAATAGCTAG
AA sequence Show only first row Show all	>Lus10035229 pacid=23162591 polypeptide=Lus10035229 locus=Lus10035229.g ID=Lus10035229.BGIv1.0 annot-version=v1.0 MGPRCYAEDLDPLVMSMINGHIIVFMNVSFNSKLMQIWGDDNPRGAERLPPGIVAAESDLYLQRLWGMPAEDLTVKQKYLVTFTVGYKQRDNINAAVEKF SENFTVLLFHYDGRITEWDEFEWSKRAIHVSAPKQTKWWFAKRFLHPDIIAAYDYVFMWDEDLGLEHFDAEEYIRLVRKHGLEISQPGLDPEKGTTWAMT KRRGDTEVHNFVEIMAPLFSRDAWRCVWHMIQNDLVHGWGLDFVLRKCVEPAHEKIGVVDAQWIVHLGVPSLGNQGEGGFGRAPWQGVRDRCQKEWRMFY QRFSQAQKAYFWMLRLRRRDNSNDDKSNTTNS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67850			Protein of unknown function (D...		Lus10035229 [exp]	0	1
AT5G03960		IQD12	IQ-domain 12 (.1)		Lus10042025 [exp]	2.0	0.9057
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10043167 [exp]	4.0	0.9089
AT5G22090			Protein of unknown function (D...		Lus10013353 [exp]	4.1	0.9112
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10030257 [exp]	5.1	0.8613
AT3G54100			O-fucosyltransferase family pr...		Lus10027753 [exp]	7.7	0.9064
AT5G44390			FAD-binding Berberine family p...		Lus10026290 [exp]	9.5	0.8985
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10021412 [exp]	10.4	0.8992
AT1G09170			P-loop nucleoside triphosphate...		Lus10020682 [exp]	10.5	0.9002
AT3G27440		UKL5	uridine kinase-like 5 (.1)		Lus10022289 [exp]	11.0	0.8981
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10010715 [exp]	12.1	0.8318

Compare expression of checked genes

Lus10035229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.