Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27530 1123 / 0 MAG4, GC6 MAIGO 4, golgin candidate 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032089 [exp] 1545 / 0 AT3G27530 1143 / 0.0 MAIGO 4, golgin candidate 6 (.1) Lus10000216 [exp] 652 / 0 AT3G27530 400 / 3e-132 MAIGO 4, golgin candidate 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G343500 [exp] 1328 / 0 AT3G27530 1249 / 0.0 MAIGO 4, golgin candidate 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04869 [flax] [poplar] Uso1_p115_head Uso1 / p115 like vesicle tethering protein, head region PF04871 [flax] [poplar] Uso1_p115_C Uso1 / p115 like vesicle tethering protein, C terminal region
Representative CDS sequence Show only first row Show all	>Lus10035230 pacid=23162481 polypeptide=Lus10035230 locus=Lus10035230.g ID=Lus10035230.BGIv1.0 annot-version=v1.0 ATGGATTTAGTCTCTGGCTACAAGGGGATGGTTGGGCTTGTTTTTGGTAATGAGAATTCGTCCTCAAATGAAGATAGCTATGTGCAACGGTTGCTCGACC GGATCAGCACTGGTACCTTGGCAGATGATAGGAGGACAGCCTTGGTCGAGCTTCAATCTGTTGTAACAGAAAGCCGTGCTGCTCAGCTAGCATTTGGGGC TACGGGATTCCCTGTTCTGATGGGTATCTTAAAGGAGGAGAGAGATGATGTTGAGATGATCCGAGGTGCCCTAGAAACTATAGTAGGTGCTTTGACTCCT CTAGATCGATCAAAAGGGAAGAATGAGGTCCAACCAGCACAAATGAATACTGATATGCTCTCAAGCGATGCAGAAAACATATCATTGCTTCTGGGTTTAT TGTCAGAAGAGGATTTCTATATACGCTATTACACTCTCCAAATCTTAACAGCTCTTCTAGTGAATTCTCAAAACAGGTTACAGGAAGTCATTTTGACCAT TCCTCGAGGTATCACTTGGCTCATGGATATGTTGATGGATCGCGAGGTTATACGGAACGAGGCTTTGCTGCTTCTTACTTATCTCACTCGTGAAGCCGAG GAGATACAAAAAATTCTTGTATTTGAAGGTGCATTTGAGAAAATATTTAGTATAATCAAAGAGGAAGGTGGTTCTGAAGGTGGTGTTGTGGTACAGGACT GTCTGGAATTATTAAACAATCTACTCCGCAACAATACATCGAATCAGATACTGTTGAGGGAGACCGTTGGATTTGATGGTTTAATTTCAATGTTGAGATT GAGAGGAGGTGCTTACAGCTTTACCCAACAGAAGAGTGTGCTTACAACGATTAATTTGCTATTGGTGGGAGGTTCTGAAGCTGATACTGGTAAAGATGCA AATAAGCTGACTAATAAAACCATCCTGGTTCAGAAAAAGGTGCTTGATTACCTTTTGCTGTTGGGTGTTGAAAACCAATGGGCTCCAGTTGCTGTCCGTT GTGATGCATTGAGATGCATTGGTGACTTAATTACTGGTCATCGAGGGAATCTAGATGCCCTAGCTAGCAAAGTTCTTGGTGACGGCCAACAAGTAGAACC TGCTCTGAATTCTGTTCTTCGGATCATTTTGCGGGCATCCAGCATGCAGGAGTTCATTGCAGCTGACCATATCTTCAAAAGATTTTGTGAGGCACATAGT GTAGTTTACTTGTGGCTTTTGGTTCAATTGAAGAATGTTGCAGTGAGTAATTGTGATGGTCAGACTATGTTAGCTTCGACACTAATCCCGCAGCCGTATT CCATGACTCATGCTTCAATTGAAGATGATGTGAACATGTCATTTGGCAGTATGATTTTGCATGGTCTTACATCGAGTGAAACTAATGGTGACTTAGAGAC TTGTTGCAGAGCAGCTAGTGTGCTGTCACATGTGCTGAAGGACAATATGCAGTGTAAAGAAAGGGTTCTAAGGATAGAACTGGAGTCATCCTCAGGATTG GGTGATTCAGAGCCGTTGATGCACCTTATGGTGAAGTATTTAGCTCTTGCCTCTGGTGCGAAACACAAAGAAGGAAAACCAAGTAAATCAGGGAACTTGT ATATTCAAGCAATTATCCTGAAGTTGTTGGTCACTTGGATGGCCGACTGTCCTGCTGCTGTTGACTGCTTCCTAGATCTACGTCCTCATTTGTCATATCT GCTTGAGCTTGTCTCAGATCAGTCTGCCACTGTAACTGTGAGAGGCTTAGCGGCGATTCTCTTGGGAGAGTGTGTTATTTTCAACAAGTCTATTGAGGCC GGAAAAGAATCTCATGCAGTAGTTGATGGCATAAGTCAGAAGGTGGGGTTGACATCATATATCCTTAAATTTGATGAAATGAAGAAAAGCTTCCTTTTCT CGTCTGAGAAATCCACAACGTCTCATAAACCGTTAACAAGATCACCTGCTGCTAGTATGGCGGAGATTGAAGATGTTGATGAGCAGCATTCCTCCGATCA AAAGAGTGACGACCATCCCATTCTCTCATCGATGTTCGATGCAGATTTTGTTAATTTCATTAAGAGGCTGGAATCAGAAATCCGAGAAAGCATTGTTGAT GTCTACAGTCGCCCGAAAAACCAGGTGGCAGTTGTGCCAGCAGAGATGGAACAGAAGAATGGTGAAACTGACAAGGACTATGTTAAGAGACTCAAGTCAT TCGTGGAGAAACAATGCTCTGAGATACAGAATCTTCTCGGACGGAATGCAACATTGGCAGAGGATCTGGTGAAGATAGGCGGAGGTGAGTCTTCCTACTC CGAGCAAAGAGTCAGCACGGGATCTGAAAGGGTGCAGACAGAGGCACTTCGCCGAGATCTCAAGGAAGCAAACCAAAGGATAGAGATGCTGAAGGCTGAG AACACCAAACTCGAATCGGAAGCATCAATGTACCAGAATTTAGCCGGGAAAGTGGAGTCAGACCTGAAGAGTCTATCTGACGCTTACAACAGCCTGGAAC AGGCGAATTACCAGTTGGAGAAGGAGGTAAAAGCTTTGAGAATCGGAGGAGGAGGCAGTGCAGTAGATGTGGAGAGGATAAAGGCGGAAGCAAGAGAGGA AGCGCTGAAGGAAAGCGAAGGGGAGCTGAATGATTTGCTGGTGTGCTTGGGACAGGAGCAGAGCAAGGTGGAGAAGCTGAGCTCAAAGTTAGCAGATCTG GGAGAGGATGTTGATGAACTGCTAGATGGCATTGGTGATGACTTGGGACTTCCGGTGGATGGCGGCGAAGATGAAGAAGATGCCGACTAA
AA sequence Show only first row Show all	>Lus10035230 pacid=23162481 polypeptide=Lus10035230 locus=Lus10035230.g ID=Lus10035230.BGIv1.0 annot-version=v1.0 MDLVSGYKGMVGLVFGNENSSSNEDSYVQRLLDRISTGTLADDRRTALVELQSVVTESRAAQLAFGATGFPVLMGILKEERDDVEMIRGALETIVGALTP LDRSKGKNEVQPAQMNTDMLSSDAENISLLLGLLSEEDFYIRYYTLQILTALLVNSQNRLQEVILTIPRGITWLMDMLMDREVIRNEALLLLTYLTREAE EIQKILVFEGAFEKIFSIIKEEGGSEGGVVVQDCLELLNNLLRNNTSNQILLRETVGFDGLISMLRLRGGAYSFTQQKSVLTTINLLLVGGSEADTGKDA NKLTNKTILVQKKVLDYLLLLGVENQWAPVAVRCDALRCIGDLITGHRGNLDALASKVLGDGQQVEPALNSVLRIILRASSMQEFIAADHIFKRFCEAHS VVYLWLLVQLKNVAVSNCDGQTMLASTLIPQPYSMTHASIEDDVNMSFGSMILHGLTSSETNGDLETCCRAASVLSHVLKDNMQCKERVLRIELESSSGL GDSEPLMHLMVKYLALASGAKHKEGKPSKSGNLYIQAIILKLLVTWMADCPAAVDCFLDLRPHLSYLLELVSDQSATVTVRGLAAILLGECVIFNKSIEA GKESHAVVDGISQKVGLTSYILKFDEMKKSFLFSSEKSTTSHKPLTRSPAASMAEIEDVDEQHSSDQKSDDHPILSSMFDADFVNFIKRLESEIRESIVD VYSRPKNQVAVVPAEMEQKNGETDKDYVKRLKSFVEKQCSEIQNLLGRNATLAEDLVKIGGGESSYSEQRVSTGSERVQTEALRRDLKEANQRIEMLKAE NTKLESEASMYQNLAGKVESDLKSLSDAYNSLEQANYQLEKEVKALRIGGGGSAVDVERIKAEAREEALKESEGELNDLLVCLGQEQSKVEKLSSKLADL GEDVDELLDGIGDDLGLPVDGGEDEEDAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10035230 [exp]	0	1
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10017092 [exp]	1.7	0.9464
AT2G44140			Peptidase family C54 protein (...		Lus10027079 [exp]	1.7	0.9558
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10009217 [exp]	2.2	0.9357
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10002706 [exp]	2.4	0.9525
AT1G10095			Protein prenylyltransferase su...		Lus10042569 [exp]	3.5	0.9357
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Lus10021784 [exp]	5.7	0.9305
AT1G49350			pfkB-like carbohydrate kinase ...		Lus10010290 [exp]	6.5	0.9326
AT1G60995			unknown protein		Lus10014638 [exp]	7.7	0.9228
AT1G32340		NHL8	NDR1/HIN1-like 8 (.1)		Lus10000908 [exp]	8.5	0.9141
AT1G07650			Leucine-rich repeat transmembr...		Lus10010951 [exp]	10.2	0.9168

Compare expression of checked genes

Lus10035230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.