Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27540 672 / 0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT5G14480 654 / 0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT3G01620 626 / 0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT1G12990 619 / 0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT1G67880 609 / 0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT2G13290 414 / 2e-144 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) AT3G26445 109 / 5e-29 beta-1,4-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032088 [exp] 795 / 0 AT3G27540 676 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10022281 [exp] 733 / 0 AT3G27540 675 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10003666 [exp] 731 / 0 AT3G27540 670 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10006474 [exp] 637 / 0 AT1G12990 657 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10006475 [exp] 625 / 0 AT1G12990 654 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10043257 [exp] 436 / 4e-153 AT2G13290 538 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Lus10019400 [exp] 434 / 2e-152 AT2G13290 538 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Lus10038093 [exp] 433 / 8e-152 AT2G13290 533 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Lus10000322 [exp] 0 / 1 AT1G12990 63 / 4e-23 beta-1,4-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G343600 [exp] 665 / 0 AT3G27540 627 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Potri.008G186000 [exp] 635 / 0 AT1G12990 691 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Potri.010G046900 [exp] 624 / 0 AT1G12990 675 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Potri.018G127900 [exp] 435 / 1e-152 AT2G13290 530 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Potri.006G066700 [exp] 429 / 2e-150 AT2G13290 526 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04724 [flax] [poplar] Glyco_transf_17 Glycosyltransferase family 17
Representative CDS sequence Show only first row Show all	>Lus10035231 pacid=23162469 polypeptide=Lus10035231 locus=Lus10035231.g ID=Lus10035231.BGIv1.0 annot-version=v1.0 ATGGATGAAGAGTACTACAGTTCCAAAAAAACCGACGATATTTGCGAGAACGTTTGCGGCCAGCAGTCATCTAAAGGGCCTCTAAGCATGTCTAGATTGA AGTGCATCTTGCGAGGGTTTGATTTCAGAACCTATTTGCTGATATTCATCGCTATCCCGCTGGTGGTGTTTGGAATTTATGTACATGGCCAGAAGATCAC TTATTTCCTGAGGCCGCTCTGGGAGAGACCTCCAAAGCCATTCAACGTCATCCCTCATTACTACAACGAGAACGTAACAATGGAGAATCTGTGCAAGCTT CACGGCTGGGGAGTTCGCGAATCCCCAAGGCGGGTCTACGATGCTGTGCTGTTCAGTAACGAGGTTGACATTCTCACCATCCGTTGGAACGAATTGTACC CGTACATAACACAGTTTGTGCTTCTCGAGTCGAACTCTACGTTCACTGCATTGCCCAAACCGCTCATCTTCGCAAGCAATAGGGACAATTTCAAGTTCAT CGAGCCTCGGTTGACTTATGGGACCATCGGGGGACGATTCAAGAAGGGTGAGAATCCGTTCGTGGAGGAAGCATACCAGAGAGTTGCTTTGGACCAGCTG ATTAAGATAGCTGGTATAGAAGACGATGATTTGCTGATAATGTCTGATGTCGATGAGATCCCTAGTGCACACACGATCAATCTCCTGAGATGGTGCGATG ACATTCCTCCTATCCTTCATCTTCAGTTCCGGAATTTCCTCTACTCTTTCGAGTATTACGTGGATAGCAAGAGCTGGAGAGCTTCCATTCATAGGTACAA GACGGGGAAGACTAGGTATGCACATTTCCGTCAGTCGGATATCCTTCTATCTGATTCAGGGTGGCATTGTAGCTTTTGCTTCCGGTATATCAGCGACTTC ATATTTAAGATGAAAGCATACAGCCATTACGACCGCGTGAGATTCTCACACTTTTTGGATCCGAAACGAGTTCAAGATGTCATCTGTCAGGGTGCTAACC TGTTTGACATGCTTCCAGAGGAGTACACTTTCAGGGACATCATCGGCAAGATGGGTAATATTCCTCGTTCGTTCTCAGCGGTTCACCTCCCTGCATTCTT GTTGAATAATGCAGAAAAGTACAAGTATCTCCTGCCTGGTAACTGCAGGAGAGAAAGTGGCTGA
AA sequence Show only first row Show all	>Lus10035231 pacid=23162469 polypeptide=Lus10035231 locus=Lus10035231.g ID=Lus10035231.BGIv1.0 annot-version=v1.0 MDEEYYSSKKTDDICENVCGQQSSKGPLSMSRLKCILRGFDFRTYLLIFIAIPLVVFGIYVHGQKITYFLRPLWERPPKPFNVIPHYYNENVTMENLCKL HGWGVRESPRRVYDAVLFSNEVDILTIRWNELYPYITQFVLLESNSTFTALPKPLIFASNRDNFKFIEPRLTYGTIGGRFKKGENPFVEEAYQRVALDQL IKIAGIEDDDLLIMSDVDEIPSAHTINLLRWCDDIPPILHLQFRNFLYSFEYYVDSKSWRASIHRYKTGKTRYAHFRQSDILLSDSGWHCSFCFRYISDF IFKMKAYSHYDRVRFSHFLDPKRVQDVICQGANLFDMLPEEYTFRDIIGKMGNIPRSFSAVHLPAFLLNNAEKYKYLLPGNCRRESG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10035231 [exp]	0	1
					Lus10039441 [exp]	1.4	0.8981
AT1G75860			unknown protein		Lus10033130 [exp]	5.1	0.8975
AT4G32020			unknown protein		Lus10001936 [exp]	5.3	0.8917
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10030517 [exp]	5.3	0.8796
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10026894 [exp]	6.6	0.8682
AT4G32020			unknown protein		Lus10001940 [exp]	8.5	0.8825
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10032088 [exp]	8.7	0.8459
AT5G11000			Plant protein of unknown funct...		Lus10017128 [exp]	10.4	0.8466
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10014177 [exp]	10.8	0.8653
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10032372 [exp]	10.8	0.8919

Compare expression of checked genes

Lus10035231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.