Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45140 582 / 0 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) AT1G67560 456 / 9e-152 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G17420 448 / 6e-149 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT1G72520 439 / 3e-145 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G55020 405 / 5e-133 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT3G22400 379 / 1e-122 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032087 [exp] 860 / 0 AT3G45140 894 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10031236 [exp] 800 / 0 AT3G45140 805 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10031809 [exp] 791 / 0 AT3G45140 753 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10039094 [exp] 702 / 0 AT3G45140 946 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10031810 [exp] 680 / 0 AT3G45140 959 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002547 [exp] 638 / 0 AT3G45140 971 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002545 [exp] 634 / 0 AT3G45140 991 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10041646 [exp] 631 / 0 AT3G45140 939 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10027379 [exp] 545 / 0 AT1G72520 867 / 0.0 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G015400 [exp] 648 / 0 AT3G45140 990 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015300 [exp] 647 / 0 AT3G45140 943 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.017G046200 [exp] 625 / 0 AT3G45140 979 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015500 [exp] 621 / 0 AT3G45140 975 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.009G022400 [exp] 617 / 0 AT3G45140 1008 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.010G057100 [exp] 486 / 1e-163 AT1G67560 1144 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.008G178000 [exp] 471 / 1e-157 AT1G67560 1155 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.001G167700 [exp] 465 / 2e-155 AT1G17420 1444 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.003G067600 [exp] 451 / 4e-153 AT1G17420 1000 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.005G032400 [exp] 394 / 1e-128 AT1G55020 1308 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00305 [flax] [poplar] Lipoxygenase Lipoxygenase
Representative CDS sequence Show only first row Show all	>Lus10035232 pacid=23162409 polypeptide=Lus10035232 locus=Lus10035232.g ID=Lus10035232.BGIv1.0 annot-version=v1.0 ATGGTCACAGAGAAATGTGGAAATGAATGTCTGCAGGAATGGCCGCTGAAGAGTAAGCTTGATCCAGAAATCTATGGTCCACCGGAATCAGCAATTACAA CTGTAGCTGTTGAAAGACAAATCGGAGGTTTCTTGACAGTTGAGGAGGCTATAAAGCAAAAGAAGTTATTCATCCTGGATTACCATGATCTGTTCTTACC GTTTATGAGCCTTGCAAGGCAGCAAGAAGGAAATGTACTTTACGAGTCAAGAGCATTGTTCTTTCTCACCCCAGTTGGCACGTTGAAGCCTGTTGCAATT GAGCTTTCCAGACCACCAATGGACGGCAAGCCACAGTGGAAAGAAGTCTACACACCTACATTTTGTTGTTCCACTGATCAGTGGCTGTGGAAGCTGGCCA AAACCCACGTCCCTGTACATGATGTTGGCTATCATGAACTAGTTAGCCATTGGCTGAGAACGCATTGCTGCACAGAACCATACATAATTGCAACGAATCG CCAACTTAGTGTCATGCACCCAGTCTATAGACTCTTGTTACGTCACTTTCGTTACACGATGGAGATCAATGCTGTAGCTCGCCAAGCTTTGATCAATGCA GGTGGCATAATTGAAACTTGCTTTGGTCCTCTGAAGTATTCCGTCAAGCTCAGTTCTGCATGTTACGCCCAAAACTGGCGCTTCGACTACGAGGCACTTC CAAAGGACCTAATCAGGCGACCCTTCAGCCCGCATGGCCTAAAATTAACGATCGAGGACTACCCATATGCGAGCTACGGTCTAATTATGTGGGACGCCTT GGAGAAATGGGTTACCGACTACATCAATCATTACTATCCAGACCCAACCCTCGTGGCTTCCGAGTCAGAGCTTCGAGCCTGGTGGACCGAGATTCGTACG TTTGGCCATCAGGACAAGAAGGACGAGCCCTGGTGGCCAACACTAGGAACCCCTCGAGATCTCGTGGGGATCCTTACAACGATAATGTGGGTTACATCAG GTCACCATGCCGCAGTGAACTTCGGACAGTATACATTCGGAGGCCACCTCCACCTCAGGCCAACAATTGGGAGAAAGAGGATGCCGAATGAAGATGCAAC CAGCGAAGAGTGGAAGAAGTTCATAGAGAAACCCGAAACGGTGCTCCTGGAGATGTACCCGTCGCAGTTGCAGGCATCAATGGTGCTGGCCGTTTTCTAC GTTTTGTCTTTCCACTCCATTGATGAACAGTACATGGGGAAGGAGATGGACCGAGCATGGGCCGATGACCCGGTAATCAAATCGGCTTTCGAGAAGTTCA GCGGGAGGTTGATGGAGCTGGAAATGGAAATCGACGCACGTAATGAAAACCCGAATTTGAGAAACCGAAATGGTGCTGGGGATCTCTCTAGTGGGCTTTC TAGGACTGCATATTGGGCTAAGATGGACTTTGGGACAGTTGGAACAACCCAGAACAAAGGCACACTTCCTTAA
AA sequence Show only first row Show all	>Lus10035232 pacid=23162409 polypeptide=Lus10035232 locus=Lus10035232.g ID=Lus10035232.BGIv1.0 annot-version=v1.0 MVTEKCGNECLQEWPLKSKLDPEIYGPPESAITTVAVERQIGGFLTVEEAIKQKKLFILDYHDLFLPFMSLARQQEGNVLYESRALFFLTPVGTLKPVAI ELSRPPMDGKPQWKEVYTPTFCCSTDQWLWKLAKTHVPVHDVGYHELVSHWLRTHCCTEPYIIATNRQLSVMHPVYRLLLRHFRYTMEINAVARQALINA GGIIETCFGPLKYSVKLSSACYAQNWRFDYEALPKDLIRRPFSPHGLKLTIEDYPYASYGLIMWDALEKWVTDYINHYYPDPTLVASESELRAWWTEIRT FGHQDKKDEPWWPTLGTPRDLVGILTTIMWVTSGHHAAVNFGQYTFGGHLHLRPTIGRKRMPNEDATSEEWKKFIEKPETVLLEMYPSQLQASMVLAVFY VLSFHSIDEQYMGKEMDRAWADDPVIKSAFEKFSGRLMELEMEIDARNENPNLRNRNGAGDLSSGLSRTAYWAKMDFGTVGTTQNKGTLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10035232 [exp]	0	1
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10034903 [exp]	1.0	0.9564
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10033022 [exp]	4.0	0.8434
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10017306 [exp]	5.3	0.8937
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10012554 [exp]	7.1	0.7346
AT2G01690			ARM repeat superfamily protein...		Lus10003679 [exp]	10.5	0.8809
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10030409 [exp]	12.5	0.8725
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10000481 [exp]	14.0	0.8725
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000683 [exp]	15.3	0.8725
					Lus10001790 [exp]	16.5	0.8725
AT5G13660			unknown protein		Lus10005963 [exp]	17.7	0.8725

Compare expression of checked genes

Lus10035232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.