Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50180 536 / 0 Protein kinase superfamily protein (.1) AT3G27560 529 / 0 ATN1 Protein kinase superfamily protein (.1) AT5G40540 524 / 0 Protein kinase superfamily protein (.1) AT5G01850 396 / 3e-138 Protein kinase superfamily protein (.1) AT5G66710 290 / 1e-95 Protein kinase superfamily protein (.1) AT3G50720 253 / 1e-81 Protein kinase superfamily protein (.1) AT3G50730 244 / 4e-78 Protein kinase superfamily protein (.1) AT4G31170 228 / 2e-71 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 224 / 6e-70 Protein kinase superfamily protein (.1) AT1G62400 216 / 2e-67 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032086 [exp] 686 / 0 AT5G50180 565 / 0.0 Protein kinase superfamily protein (.1) Lus10025154 [exp] 392 / 6e-136 AT5G01850 523 / 0.0 Protein kinase superfamily protein (.1) Lus10025236 [exp] 372 / 5e-128 AT5G01850 493 / 3e-176 Protein kinase superfamily protein (.1) Lus10026034 [exp] 270 / 6e-88 AT5G66710 342 / 1e-115 Protein kinase superfamily protein (.1) Lus10020374 [exp] 228 / 4e-71 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Lus10020018 [exp] 211 / 5e-65 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10011173 [exp] 212 / 1e-64 AT5G58950 567 / 0.0 Protein kinase superfamily protein (.1) Lus10015436 [exp] 211 / 4e-64 AT5G58950 572 / 0.0 Protein kinase superfamily protein (.1) Lus10025442 [exp] 209 / 1e-63 AT5G58950 510 / 2e-178 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G343900 [exp] 580 / 0 AT5G50180 577 / 0.0 Protein kinase superfamily protein (.1) Potri.017G065500 [exp] 576 / 0 AT5G50180 574 / 0.0 Protein kinase superfamily protein (.1) Potri.016G134900 [exp] 400 / 2e-139 AT5G01850 487 / 3e-174 Protein kinase superfamily protein (.1) Potri.018G001800 [exp] 231 / 1e-72 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001900 [exp] 230 / 3e-72 AT2G24360 648 / 0.0 Protein kinase superfamily protein (.1) Potri.006G280000 [exp] 229 / 1e-71 AT4G31170 677 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.006G279900 [exp] 227 / 6e-71 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1) Potri.004G001900 [exp] 212 / 8e-66 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.011G022800 [exp] 211 / 2e-65 AT1G62400 613 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.005G082200 [exp] 210 / 2e-63 AT5G58950 607 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10035233 pacid=23162579 polypeptide=Lus10035233 locus=Lus10035233.g ID=Lus10035233.BGIv1.0 annot-version=v1.0 ATGGGATCTGCTAACATGATGATCAATTGTAAACAAGATTTCAATTTGGAAGATAGGTTGTTGATTGATCCCAAGCTTCTATTTGTTGGACCAAAGATTG GTGAAGGTGCTCATGCCAAAGTTTATGAGGGAAAGTATAAGAATCAAACTGTGGCCATTAAAGTAGTTCACAGAGGAGAAACTCCAGAGGAGATTGCCAA GAGAGAAGGACGATTTGCAAGAGAGATTGCAATGTTGTCCAAAGTAAAACACAGGAACCTAGTCAAGTTCATTGGCGCTTGCAAAGAACCGGTCATGGTG ATAGTTACAGAGCTGCTGTTGGGTGGAACACTTCGAAAATACTTGCTGAACTTGCGCCCTAGGTGTTTAGAGACTCATGTCGCGATTGCTTTTGCGCTTG ATATAGCTCGTGCAATGGAATGCTTACACTCTCACGGGATCATTCATCGCGATCTGAAACCTGAGAACTTGCTCTTGACAGCAGACCACAGAACAATAAA GCTTGCAGATTTCGGTTTAGCCAGAGAAGAGTCATTAACTGAGATGATGACTGCCGAAACAGGGACATATCGTTGGATGGCCCCTGAGCTTTACAGCACG GTAACACTAAGGCAAGGCGAGAAAAAGCACTATAATCACAAGGTGGATGCTTATAGTTTTGCAATTGTATTGTGGGAGCTGATCCACAACAAGTTGCCTT TTGAAGGCATGTCAAATCTGCAGGCAGCATATGCCGCTGCATTTAAGAATTTTAGACCAAGTGCGGAGGACCTCCCTGAGGACCTAGCTCTAATAGTGAC CTCATGTTGGCAAGAGGATCCAAATGCCAGACCGAATTTTAGCGAGATCATACAGATGCTCTTGCGCTACCTCTCGGCCATCTCACCAACAGTAGCGCCG GCAATCCCAGCTCGAATGTATTCCTCAGAGAACAAAGTGCTTGCACCTGAGTCGCCCGGCGAGAGTTCGCTCATGGCTGCAAGAGATGATCCAGGAGACA CCCCCAAAACCCAGAATGAAGACCAGCCCAGTAAAGGTTTCTTCTTCTGCTGTTAG
AA sequence Show only first row Show all	>Lus10035233 pacid=23162579 polypeptide=Lus10035233 locus=Lus10035233.g ID=Lus10035233.BGIv1.0 annot-version=v1.0 MGSANMMINCKQDFNLEDRLLIDPKLLFVGPKIGEGAHAKVYEGKYKNQTVAIKVVHRGETPEEIAKREGRFAREIAMLSKVKHRNLVKFIGACKEPVMV IVTELLLGGTLRKYLLNLRPRCLETHVAIAFALDIARAMECLHSHGIIHRDLKPENLLLTADHRTIKLADFGLAREESLTEMMTAETGTYRWMAPELYST VTLRQGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNFRPSAEDLPEDLALIVTSCWQEDPNARPNFSEIIQMLLRYLSAISPTVAP AIPARMYSSENKVLAPESPGESSLMAARDDPGDTPKTQNEDQPSKGFFFCC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50180			Protein kinase superfamily pro...		Lus10035233 [exp]	0	1
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031798 [exp]	4.7	0.7738
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10007095 [exp]	5.5	0.7518
AT1G26810		GALT1	galactosyltransferase1 (.1)		Lus10030467 [exp]	7.9	0.7467
AT2G26790			Pentatricopeptide repeat (PPR)...		Lus10020298 [exp]	11.5	0.7123
AT3G21180		ATACA9, ACA9	autoinhibited Ca\(2+\)-ATPase ...		Lus10034840 [exp]	13.0	0.7340
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10032778 [exp]	13.0	0.7551
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Lus10037678 [exp]	13.9	0.7550
AT3G05740		RECQI1	RECQ helicase l1 (.1)		Lus10042451 [exp]	16.2	0.7120
AT5G12430		TPR16	tetratricopeptide repeat 16, H...		Lus10005022 [exp]	17.5	0.7255
AT2G07680		ATMRP11, ABCC13	ATP-binding cassette C13, mult...		Lus10041661 [exp]	17.7	0.7305

Compare expression of checked genes

Lus10035233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.