Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39490 374 / 3e-124 CYP96A10 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) AT2G23180 373 / 4e-124 CYP96A1 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) AT1G57750 352 / 3e-116 MAH1, CYP96A15 MID-CHAIN ALKANE HYDROXYLASE 1, "cytochrome P450, family 96, subfamily A, polypeptide 15", cytochrome P450, family 96, subfamily A, polypeptide 15 (.1.2) AT5G23190 352 / 4e-115 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT5G08250 346 / 6e-114 Cytochrome P450 superfamily protein (.1) AT1G47620 344 / 8e-113 CYP96A8 "cytochrome P450, family 96, subfamily A, polypeptide 8", cytochrome P450, family 96, subfamily A, polypeptide 8 (.1) AT1G65340 342 / 3e-112 CYP96A3 "cytochrome P450, family 96, subfamily A, polypeptide 3", cytochrome P450, family 96, subfamily A, polypeptide 3 (.1) AT4G39480 336 / 1e-109 CYP96A9 "cytochrome P450, family 96, subfamily A, polypeptide 9", cytochrome P450, family 96, subfamily A, polypeptide 9 (.1) AT4G32170 335 / 2e-109 CYP96A2 "cytochrome P450, family 96, subfamily A, polypeptide 2", cytochrome P450, family 96, subfamily A, polypeptide 2 (.1) AT2G21910 330 / 1e-107 CYP96A5 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035235 [exp] 604 / 0 AT4G39490 359 / 2e-118 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10002527 [exp] 524 / 0 AT2G23180 454 / 7e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10022279 [exp] 516 / 3e-180 AT2G23180 449 / 4e-154 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10003669 [exp] 515 / 1e-179 AT2G23180 440 / 4e-150 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10002525 [exp] 371 / 5e-123 AT4G39490 410 / 2e-138 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10022277 [exp] 365 / 6e-121 AT4G39490 395 / 1e-132 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10025678 [exp] 355 / 3e-117 AT4G39490 363 / 9e-121 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10028047 [exp] 352 / 4e-116 AT2G21910 375 / 1e-125 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) Lus10025677 [exp] 339 / 9e-111 AT2G23180 361 / 1e-119 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G064400 [exp] 396 / 4e-133 AT4G39490 477 / 8e-165 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G132800 [exp] 392 / 1e-131 AT4G39490 589 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.001G397900 [exp] 388 / 9e-130 AT4G39490 480 / 6e-166 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.007G080300 [exp] 379 / 3e-126 AT4G39490 574 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G086900 [exp] 354 / 6e-117 AT2G23180 455 / 2e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.015G087000 [exp] 333 / 6e-110 AT2G23180 373 / 2e-125 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.007G072100 [exp] 327 / 1e-105 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.005G092200 [exp] 326 / 4e-105 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.010G050100 [exp] 322 / 6e-104 AT1G24540 684 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.008G183300 [exp] 320 / 5e-103 AT1G24540 682 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10035234 pacid=23162360 polypeptide=Lus10035234 locus=Lus10035234.g ID=Lus10035234.BGIv1.0 annot-version=v1.0 ATGACAGTCCTACTATTCTGGCTTATAACCTTACTACTAGTCTACATCTGCTGCCTCTGCATCCCCTACAAGAAATCACCAGTTCCAAAGTGGCCTCTCC TTGGAGTACTTCCATCTCTACTGTGGAACCTTTCCCGAAACTGTATCCATGAATTCGGGACTCGAATCCTCAAACCAAATGGACGCACCTTCCATGTCGG AGGTTCCTGCTTCACTAACCTTTCCTGGCTCGTCACCTGCGACCCGATGAATGTTCGCCACATCCTCTGCAGAAACTTCTCCAATTTCCCCAAAGGAGTG AAGTTCAAGACCATAACGGAGGCACTGGGAGACGGACCAATAAACAGCGACGGCGAGTCATGGAAGATGCAAAGGCAAATCGTGGATTCCCTCCTGAAGA CAGCCAAGTTCCACAATCTATACACCAAAACCCTCCATCGGAAACTTGGAACCAACCTCATCCCAATTCTCGAACGAGCCGCCTCATCGTCGTCACCAAA TCTGGAGTTACAGGACCTGATGAAGCGATTCACGTTCGACGTTACCTGTTTGGTGATGTTTGGATCCGATCCAGGATGCTGCATTTCCCCGGAATCCCCT CGTGTTGCTTTCGAAGCAGCGTTCGACTTGGTAATGCGAGTTATTATGCATCGATACTGCCTTCCGGAGGCTGTTTGGAAGTTGCAGAGATGGGCCGGGA TCGGGCTGGAACGTAAGTTTGGCCCCGCGGTCGAATGTGTTAACGGATTTCTGGACGAGAAGATCAGACTGAAGATGATGGAGATAGTTAATGGTGATCA TGCTGATGGTGATCATGGTGATGATTTCCTGAGGGATATGATAGTTGAAACAGAAGGAAGTTTGGGGAAGGATGGTGTTAAGTATGTGAGGGGGATATTG TTTATTTTGATGGTGGGAGGGAGAGACACCATTGCTGCTGGTTTGACTTGGTTCTTCTGGCTTGTCTCCACTAATCCTGCTGTGGAAAGCAGACTTTTGG AAGAGATGGACCGAGTAATTACACAATCTGGTGAAAAACAGAGCAGCAGCTATCCAAGCACGGAGGAGTTGAACAAAATGGTGTATCTCCACGGAGCCAT AAGCGAGACTCTAAGGCTATACCCACCGGTGCCTTTCAACCACAAACAACCTCTGCAACCCGATATTCTACCCAGCGGCCACGCCATTGACGAGAACACA GGCGTTCTGATTTGCATCTACTCGATGGGGAGGATGGAGGAGATATGGGGAGAGGATTGCTTGGAGTTCAAACCTGAGAGGTGGGTATTACAGAGAGATG ATGGTGGTAAGAAGAAGAGGAGCATTGTGCAGTATGTTCCGTCTTACAAGCTGTCAGCTTTTCTAGCTGGGCCGAGAGTTTGCCCTGGGAGGCAGATCGC ATTCGCAGAGATGAAGACGGTAGCGTATGCTGTTTTGAGTAGGTTTAAGATTGAGGTGGTGGATGATTGTGGTGGTAACAAGGATGTGGTTCCACTTGCT TCTATTGTATTGTTCATGAAATCTGGGTTGAAAGTTAAGGTTTCCAGGAGGAGGACGACATTTCCCTGCGAGTGA
AA sequence Show only first row Show all	>Lus10035234 pacid=23162360 polypeptide=Lus10035234 locus=Lus10035234.g ID=Lus10035234.BGIv1.0 annot-version=v1.0 MTVLLFWLITLLLVYICCLCIPYKKSPVPKWPLLGVLPSLLWNLSRNCIHEFGTRILKPNGRTFHVGGSCFTNLSWLVTCDPMNVRHILCRNFSNFPKGV KFKTITEALGDGPINSDGESWKMQRQIVDSLLKTAKFHNLYTKTLHRKLGTNLIPILERAASSSSPNLELQDLMKRFTFDVTCLVMFGSDPGCCISPESP RVAFEAAFDLVMRVIMHRYCLPEAVWKLQRWAGIGLERKFGPAVECVNGFLDEKIRLKMMEIVNGDHADGDHGDDFLRDMIVETEGSLGKDGVKYVRGIL FILMVGGRDTIAAGLTWFFWLVSTNPAVESRLLEEMDRVITQSGEKQSSSYPSTEELNKMVYLHGAISETLRLYPPVPFNHKQPLQPDILPSGHAIDENT GVLICIYSMGRMEEIWGEDCLEFKPERWVLQRDDGGKKKRSIVQYVPSYKLSAFLAGPRVCPGRQIAFAEMKTVAYAVLSRFKIEVVDDCGGNKDVVPLA SIVLFMKSGLKVKVSRRRTTFPCE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10035234 [exp]	0	1
AT4G03220			Protein with RNI-like/FBD-like...		Lus10027258 [exp]	1.4	0.7926
					Lus10007605 [exp]	1.4	0.7645
AT1G32910			HXXXD-type acyl-transferase fa...		Lus10006333 [exp]	3.5	0.7405
AT1G04560			AWPM-19-like family protein (....		Lus10017578 [exp]	5.7	0.6526
AT2G34740			Protein phosphatase 2C family ...		Lus10038455 [exp]	11.2	0.6337
					Lus10032804 [exp]	15.0	0.6384
AT2G26490			Transducin/WD40 repeat-like su...		Lus10016289 [exp]	20.8	0.6156
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10017997 [exp]	22.0	0.6156
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10039546 [exp]	22.2	0.5931
AT5G09360		LAC14	laccase 14 (.1)		Lus10036070 [exp]	23.2	0.6156

Compare expression of checked genes

Lus10035234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.