Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39490 349 / 2e-114 CYP96A10 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) AT2G23180 340 / 5e-111 CYP96A1 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) AT1G57750 333 / 1e-108 MAH1, CYP96A15 MID-CHAIN ALKANE HYDROXYLASE 1, "cytochrome P450, family 96, subfamily A, polypeptide 15", cytochrome P450, family 96, subfamily A, polypeptide 15 (.1.2) AT4G39480 332 / 7e-108 CYP96A9 "cytochrome P450, family 96, subfamily A, polypeptide 9", cytochrome P450, family 96, subfamily A, polypeptide 9 (.1) AT4G32170 329 / 7e-107 CYP96A2 "cytochrome P450, family 96, subfamily A, polypeptide 2", cytochrome P450, family 96, subfamily A, polypeptide 2 (.1) AT2G21910 325 / 2e-105 CYP96A5 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) AT1G47620 318 / 2e-102 CYP96A8 "cytochrome P450, family 96, subfamily A, polypeptide 8", cytochrome P450, family 96, subfamily A, polypeptide 8 (.1) AT5G52320 312 / 1e-100 CYP96A4 "cytochrome P450, family 96, subfamily A, polypeptide 4", cytochrome P450, family 96, subfamily A, polypeptide 4 (.1) AT1G65340 311 / 6e-100 CYP96A3 "cytochrome P450, family 96, subfamily A, polypeptide 3", cytochrome P450, family 96, subfamily A, polypeptide 3 (.1) AT4G39510 311 / 7e-100 CYP96A12 "cytochrome P450, family 96, subfamily A, polypeptide 12", cytochrome P450, family 96, subfamily A, polypeptide 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035234 [exp] 602 / 0 AT4G39490 382 / 1e-127 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10002527 [exp] 509 / 4e-177 AT2G23180 454 / 7e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10022279 [exp] 503 / 9e-175 AT2G23180 449 / 4e-154 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10003669 [exp] 501 / 1e-173 AT2G23180 440 / 4e-150 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10022277 [exp] 375 / 9e-125 AT4G39490 395 / 1e-132 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10002525 [exp] 367 / 3e-121 AT4G39490 410 / 2e-138 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10032085 [exp] 347 / 2e-117 AT1G13140 180 / 2e-53 "cytochrome P450, family 86, subfamily C, polypeptide 3", cytochrome P450, family 86, subfamily C, polypeptide 3 (.1.2) Lus10028047 [exp] 348 / 2e-114 AT2G21910 375 / 1e-125 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) Lus10025678 [exp] 344 / 8e-113 AT4G39490 363 / 9e-121 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G397900 [exp] 382 / 2e-127 AT4G39490 480 / 6e-166 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.005G064400 [exp] 375 / 7e-125 AT4G39490 477 / 8e-165 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G132800 [exp] 363 / 3e-120 AT4G39490 589 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G086900 [exp] 353 / 3e-116 AT2G23180 455 / 2e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.007G080300 [exp] 341 / 3e-111 AT4G39490 574 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G087000 [exp] 329 / 3e-108 AT2G23180 373 / 2e-125 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.008G183300 [exp] 301 / 5e-96 AT1G24540 682 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.010G050100 [exp] 298 / 8e-95 AT1G24540 684 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.008G125300 [exp] 296 / 1e-94 AT4G39490 410 / 4e-139 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.007G072100 [exp] 290 / 2e-91 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10035235 pacid=23162595 polypeptide=Lus10035235 locus=Lus10035235.g ID=Lus10035235.BGIv1.0 annot-version=v1.0 ATGGCAGTCCTACTCTGGCTAATTCTGTTCTCACTACTACTACTCTTGATCATCTGCTGGCTCTGCATCCCCTACAAGAAATCGGCAGCTGTTCGAAACC GGCATCTGATCTTGGGAATACTTCCATCCCTGCTGTGGAGCCTTTCCCACAACCAAGTCCATGAATTTATCACTCGAATCCTCAAACTAAATGGAGGCAC ATTCATTGTCAGAGGTCTGTTTCTCGACTATCTCTTAACCTGCCATCCGATGAACGTCCATCACATTCTCAGCAGAAACTTCTCCAATTACCCCAAAGGA GTGGAGTTAAGGACAATACTGGATGCTCTGGGAGAAGTACTAATCAACAGCGATGGCGATTCCTGGAAGATGAGAAGGGAAATCGTCGATTCCATTACGA AATCGGCCAAATTCCACAATCTCCTAATCAGAACCCTCAATCAGAAACTGGGCAACAACTTGATCCCAATTCTAGACAGAGCAGCAGCAGCAGCAGCCTC AGAGTCGGAAGAAGTTGGGATTGACTTGCAAGATCTGATGAAGAGATTGACATTCGACGCCATGTGTTTAGTGACATTGGGATTCGACCCAGAATCCCTT TCCTTGTTGGAATTCTCTCATCATCGTCATCTAGCCTTTGAAGAGTCGTTTGATTTGATAATGGAAGTAATCCTGTACAGGCATTGCGTGCCACGGTATG TCTGGAAGCTCCAGGGGTGGATTGGGATTGGGAAAGCTGGCAAGTTCGATGCCGCTGTGGAATGTGTTCACCGATTTCTGGACGAAAAGATCAGACTGAA GATGGAGGAGAGATGTACTAGGGGTGTTGTTGATGGTGCTGCTGATGATGATGATTTCTTCAGAGAGATTGTATTTGAAACAGAGCGAGTTTTCGGGAGA TCACTGAAGAAAGATTACAAGTTTGTGAGAGAAATTGTGTTTACTTTGATGTTGGCTGGGAGAGACACCGTTGCTGCTGGTTTGACGTGGTTCTTTTGGC TTCTCGCCACTCATCCTGATGCCGAAGCCAAAATATTGGAAGAAATTGATGGAGTAATTACCCAATCAGGTGGAAAACAGAAGAGGTTTCCAAGCATGGA GGAGATGAACAAAATGGTTTATCTCCAGGGAGCGATAAGCGAGACAATGAGGCTCTACCCACCGGGGCCTTTCAACCAAAAACAATCACTGGAACCCGAC GTGCTCCCAAGCGGCCACGCCATTGACAAGAACACAAGGATTCTGATCTCCATCTACTCGATGGGGAGGATGGAGGAGATTTGGGGAGAGGATTGCTTGG AGTTCAAACCTGAGAGGTGGGTTTTACTACAGAGAGATCATAATGGTGGTGATGGTGATCATAAGATGAAGAAGGGGATTGTGCATGTTCCGTCTTACAA GTTGGCAGCTTTTCTAGCTGGGCCGAGGGTTTGCCCTGGGCGGCAGATTGCATTTGCGGAGATGAAAACTGTAGCCTACTCTGTTTTGAGTAGGTTCAAG ATTGAGGTTGTGGATCATGGCAAGGATGTGGTTCCACTTGCTTCTGTTGTGATGTTCATGAAATATGGGTTGAAGGTTAGGGTTTCCACGAGGACAGACC GCATTAGCAAGTAA
AA sequence Show only first row Show all	>Lus10035235 pacid=23162595 polypeptide=Lus10035235 locus=Lus10035235.g ID=Lus10035235.BGIv1.0 annot-version=v1.0 MAVLLWLILFSLLLLLIICWLCIPYKKSAAVRNRHLILGILPSLLWSLSHNQVHEFITRILKLNGGTFIVRGLFLDYLLTCHPMNVHHILSRNFSNYPKG VELRTILDALGEVLINSDGDSWKMRREIVDSITKSAKFHNLLIRTLNQKLGNNLIPILDRAAAAAASESEEVGIDLQDLMKRLTFDAMCLVTLGFDPESL SLLEFSHHRHLAFEESFDLIMEVILYRHCVPRYVWKLQGWIGIGKAGKFDAAVECVHRFLDEKIRLKMEERCTRGVVDGAADDDDFFREIVFETERVFGR SLKKDYKFVREIVFTLMLAGRDTVAAGLTWFFWLLATHPDAEAKILEEIDGVITQSGGKQKRFPSMEEMNKMVYLQGAISETMRLYPPGPFNQKQSLEPD VLPSGHAIDKNTRILISIYSMGRMEEIWGEDCLEFKPERWVLLQRDHNGGDGDHKMKKGIVHVPSYKLAAFLAGPRVCPGRQIAFAEMKTVAYSVLSRFK IEVVDHGKDVVPLASVVMFMKYGLKVRVSTRTDRISK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10035235 [exp]	0	1
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Lus10031150 [exp]	3.3	0.9371
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10005780 [exp]	4.5	0.8535
					Lus10012972 [exp]	7.1	0.8917
AT3G50280			HXXXD-type acyl-transferase fa...		Lus10031149 [exp]	7.9	0.9204
AT5G07720			Galactosyl transferase GMA12/M...		Lus10015721 [exp]	8.7	0.8831
AT4G32800	AP2_ERF		Integrase-type DNA-binding sup...		Lus10034949 [exp]	12.8	0.8675
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10031885 [exp]	16.6	0.8778
AT2G17450		RHA3A	RING-H2 finger A3A (.1)		Lus10034153 [exp]	21.2	0.8108
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10038009 [exp]	24.3	0.8603
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10039376 [exp]	27.0	0.8912

Compare expression of checked genes

Lus10035235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.