Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05060 70 / 8e-15 Protein kinase superfamily protein (.1) AT5G27510 69 / 3e-14 Protein kinase superfamily protein (.1) AT4G36950 66 / 2e-13 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 (.1) AT2G34290 66 / 3e-13 Protein kinase superfamily protein (.1) AT2G41920 64 / 2e-12 Protein kinase superfamily protein (.1) AT2G41910 62 / 8e-12 Protein kinase superfamily protein (.1) AT2G42550 60 / 4e-11 Protein kinase superfamily protein (.1) AT5G27790 59 / 6e-11 Protein kinase superfamily protein (.1) AT3G45790 54 / 7e-09 Protein kinase superfamily protein (.1) AT3G50310 52 / 2e-08 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026894 [exp] 111 / 2e-30 AT3G50310 187 / 1e-57 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034242 [exp] 107 / 1e-28 AT3G50310 190 / 2e-58 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034288 [exp] 96 / 4e-24 AT3G50310 181 / 5e-55 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034285 [exp] 94 / 1e-23 AT5G27510 183 / 6e-56 Protein kinase superfamily protein (.1) Lus10039141 [exp] 91 / 2e-22 AT3G46140 168 / 1e-49 Protein kinase superfamily protein (.1) Lus10034216 [exp] 88 / 2e-22 AT5G27510 107 / 2e-28 Protein kinase superfamily protein (.1) Lus10029023 [exp] 83 / 4e-20 AT3G50310 147 / 8e-43 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10013791 [exp] 83 / 7e-20 AT3G45790 108 / 1e-28 Protein kinase superfamily protein (.1) Lus10017114 [exp] 79 / 3e-18 AT3G50310 127 / 3e-34 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G139200 [exp] 67 / 9e-14 AT5G67080 305 / 2e-102 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.007G044800 [exp] 67 / 1e-13 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.001G042400 [exp] 61 / 1e-11 AT3G50310 236 / 5e-75 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.009G131100 [exp] 61 / 2e-11 AT3G50310 200 / 4e-62 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.003G184200 [exp] 59 / 7e-11 AT4G36950 246 / 8e-79 mitogen-activated protein kinase kinase kinase 21 (.1) Potri.004G171500 [exp] 57 / 4e-10 AT3G50310 202 / 7e-63 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.005G139300 [exp] 56 / 1e-09 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.018G057700 [exp] 48 / 6e-07 AT4G32830 544 / 0.0 ataurora1 (.1) Potri.006G235000 [exp] 47 / 1e-06 AT4G32830 553 / 0.0 ataurora1 (.1) Potri.008G040800 [exp] 44 / 1e-05 AT1G16670 289 / 5e-96 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10035236 pacid=23162528 polypeptide=Lus10035236 locus=Lus10035236.g ID=Lus10035236.BGIv1.0 annot-version=v1.0 ATGGCCGTTAAATCATCGAGGAATTTGAGCCTTCTGATGGAGCACCAAATTCCTAACAAGTTCGCTGGTGCTCAGGAGATAATCCAGTGTTTCGGCTGTA GTAGCGTGATCTCCAGTGATCATTCATATGGTCCAACCACGACTTACAATTTGCTTATGGAATACGCCACCGGAGGGTTGCTCCCCGATTTGATCGACCT GTTACAAGGGAAGAAGAAACAACAAGACGGAGGAGGCCGCGGGAGAAGCAGAATTATTAATGCCGGAGATCGGTACACTCACTGCGACATCAAGCCTGAC AACATTCTGGTTTTTCTGAAACCGGACAGTCCTCTCTGCCATACGAAGATTGCCGATTTCGGGATTGCTGTGAAGTCACCACTGAGGTGGCGGCACCCTT GTAGAGGGACACTGAGATACTTACCGCCAGAGGTGGTTGTTTCAGGAGATGTTTCGCCGGCCATGGACATATGA
AA sequence Show only first row Show all	>Lus10035236 pacid=23162528 polypeptide=Lus10035236 locus=Lus10035236.g ID=Lus10035236.BGIv1.0 annot-version=v1.0 MAVKSSRNLSLLMEHQIPNKFAGAQEIIQCFGCSSVISSDHSYGPTTTYNLLMEYATGGLLPDLIDLLQGKKKQQDGGGRGRSRIINAGDRYTHCDIKPD NILVFLKPDSPLCHTKIADFGIAVKSPLRWRHPCRGTLRYLPPEVVVSGDVSPAMDI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34290			Protein kinase superfamily pro...		Lus10035236 [exp]	0	1
AT1G34050			Ankyrin repeat family protein ...		Lus10024844 [exp]	4.7	0.8859
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10035498 [exp]	4.7	0.8960
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10014820 [exp]	5.2	0.8809
AT5G01300			PEBP (phosphatidylethanolamine...		Lus10002212 [exp]	10.7	0.8690
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10040166 [exp]	15.4	0.8426
AT1G29380			Carbohydrate-binding X8 domain...		Lus10015259 [exp]	16.4	0.8784
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10032373 [exp]	16.9	0.8620
					Lus10000650 [exp]	17.9	0.8597
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Lus10027870 [exp]	19.4	0.8258
AT3G54200			Late embryogenesis abundant (L...		Lus10031555 [exp]	19.9	0.8461

Compare expression of checked genes

Lus10035236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.