Plant FIBer expression Database

Lus10035237 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G33220 261 / 2e-91 GRIM-19 protein (.1)
AT1G04630 259 / 1e-90 MEE4 maternal effect embryo arrest 4, GRIM-19 protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023693
[exp]
290 / 6e-103 AT2G33220 261 / 2e-91 GRIM-19 protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G173800
[exp]
268 / 2e-94 AT1G04630 261 / 3e-91 maternal effect embryo arrest 4, GRIM-19 protein (.1)
Potri.001G054500
[exp]
267 / 1e-93 AT1G04630 262 / 7e-92 maternal effect embryo arrest 4, GRIM-19 protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06212 GRIM-19 GRIM-19 protein
Representative CDS sequence
>Lus10035237 pacid=23162464 polypeptide=Lus10035237 locus=Lus10035237.g ID=Lus10035237.BGIv1.0 annot-version=v1.0
ATGACGGAGGCCGTAATCAGGAACAAGCCTGGCATGGCCAGCGTTAAGGACATGCCGCTCCTTCAGGACGGTCCTCCTCCCGGCGGATTTGCTCCGGTGA
GGTACACTCGCAGGATCCCCACCAAAGGTCCCAGCGCCGTCGCTATCTTCCTTACTGCGCTAGGGGCTTTCTCCTACGGCATGTACCAGGTTGGACAGGG
TAACAAGATCCGCAGGGTAATCAAAGAAGAGAAGTACTCTGCAAGGAGAGCCATTTTGCCTCTCCTGCAAGCAGAAGAAGATGAAAGATTTGTCAAAGAA
TGGAAGAAGTATCTGGAATACGAGGCTGAAGTAATGAAGGACGTGCCTGGTTGGAAAGTTGGTGAAAATGTGTACAACTCTGGGAAATGGATGCCTCCTG
CTAGTGGTGAACTGCGTCCTGATGTTTGGTAA
AA sequence
>Lus10035237 pacid=23162464 polypeptide=Lus10035237 locus=Lus10035237.g ID=Lus10035237.BGIv1.0 annot-version=v1.0
MTEAVIRNKPGMASVKDMPLLQDGPPPGGFAPVRYTRRIPTKGPSAVAIFLTALGAFSYGMYQVGQGNKIRRVIKEEKYSARRAILPLLQAEEDERFVKE
WKKYLEYEAEVMKDVPGWKVGENVYNSGKWMPPASGELRPDVW

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G33220 GRIM-19 protein (.1) Lus10035237
[exp]
0 1
AT3G03070 NADH-ubiquinone oxidoreductase... Lus10039147
[exp]
3.7 0.8283
AT1G47820 unknown protein Lus10035088
[exp]
6.7 0.8092
AT1G11760 MED32 unknown protein Lus10034758
[exp]
8.1 0.8125
AT1G79390 unknown protein Lus10001838
[exp]
9.8 0.7972
AT3G18510 unknown protein Lus10032475
[exp]
9.8 0.8102
AT3G06610 DNA-binding enhancer protein-r... Lus10037773
[exp]
13.4 0.8096
AT3G49870 ATARLA1C ADP-ribosylation factor-like A... Lus10012090
[exp]
16.9 0.7836
AT1G26550 FKBP-like peptidyl-prolyl cis-... Lus10019084
[exp]
23.8 0.7963
AT5G23395 MIA40 mitochondrial intermembrane sp... Lus10001795
[exp]
24.0 0.7502
AT5G66090 unknown protein Lus10028414
[exp]
26.2 0.7541

Lus10035237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.