Plant FIBer expression Database

Lus10035239 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G14830 58 / 1e-11 HSP1 heat shock protein 20-like protein 1, unknown protein
AT3G22530 57 / 6e-11 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000009
[exp]
189 / 5e-64 AT3G22530 59 / 6e-14 unknown protein
Lus10004901
[exp]
77 / 2e-18 AT3G22530 167 / 9e-52 unknown protein
Lus10010549
[exp]
0 / 1 AT3G22530 164 / 1e-51 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G086400
[exp]
76 / 5e-18 AT3G22530 165 / 3e-51 unknown protein
Potri.008G154100
[exp]
68 / 2e-15 AT3G22530 140 / 2e-42 unknown protein
Potri.002G051100
[exp]
53 / 1e-09 AT3G22530 127 / 3e-37 unknown protein
PFAM info
Representative CDS sequence
>Lus10035239 pacid=23162522 polypeptide=Lus10035239 locus=Lus10035239.g ID=Lus10035239.BGIv1.0 annot-version=v1.0
ATGAAGTTTCATCCAATGCCCAAAAGGAGGAACAACGTCAAAATCCAGTACTATGTAGACCACGGTGGCGTCAACAATCAGAGAGGAGACAGTGGCGGAG
AGTTGTCCTCCTCCGGCGGCGACGGAAACAAGAAGCTGAGAAGGCTGCCCCAAATCTTCAATCGAGTGCGGGAACTACCGTTCCGGTCGATGCTGACGTA
CGTGCCGGTGGAGGAAAGCACTGATTGCTTCCGGTTCGTGGCGGAGGCACACTATCGAAACCCATCCCGGGGTTACCAAAATCGTGATTCGACCCAACGG
GTACTTCGAATTGCCGTCGTTGGATGA
AA sequence
>Lus10035239 pacid=23162522 polypeptide=Lus10035239 locus=Lus10035239.g ID=Lus10035239.BGIv1.0 annot-version=v1.0
MKFHPMPKRRNNVKIQYYVDHGGVNNQRGDSGGELSSSGGDGNKKLRRLPQIFNRVRELPFRSMLTYVPVEESTDCFRFVAEAHYRNPSRGYQNRDSTQR
VLRIAVVG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G22530 unknown protein Lus10035239
[exp]
0 1
AT3G22530 unknown protein Lus10000009
[exp]
1.4 0.7979
AT2G46620 P-loop containing nucleoside t... Lus10006295
[exp]
7.5 0.7522
AT4G37300 MEE59 maternal effect embryo arrest ... Lus10018201
[exp]
8.7 0.7489
AT1G33560 ADR1 ACTIVATED DISEASE RESISTANCE 1... Lus10032759
[exp]
9.6 0.7473
AT5G61380 AtTOC1, TOC1, A... PSEUDO-RESPONSE REGULATOR 1, T... Lus10015720
[exp]
10.5 0.7442
AT3G02130 TOAD2, RPK2, CL... TOADSTOOL 2, clv3 peptide inse... Lus10036899
[exp]
16.7 0.7207
AT3G62930 Thioredoxin superfamily protei... Lus10029441
[exp]
21.4 0.6893
Lus10020211
[exp]
24.5 0.6776
AT2G46150 Late embryogenesis abundant (L... Lus10036403
[exp]
25.0 0.7386
AT5G22900 ATCHX3 cation/H+ exchanger 3, ARABIDO... Lus10040961
[exp]
29.4 0.6764

Lus10035239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.