Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61680 350 / 2e-114 ATTPS14 terpene synthase 14 (.1.2) AT4G16730 277 / 1e-86 AtTPS02 terpene synthase 02 (.1) AT4G16740 261 / 2e-80 ATTPS03 terpene synthase 03 (.1.2) AT2G24210 261 / 8e-80 AtTPS10 terpene synthase 10 (.1) AT3G25810 261 / 8e-80 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G25830 259 / 6e-79 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 259 / 6e-79 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT5G23960 212 / 5e-62 ATTPS21 terpene synthase 21 (.1.2) AT1G70080 176 / 2e-48 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G29410 168 / 2e-45 AtTPS25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018392 [exp] 594 / 0 AT1G61680 350 / 1e-113 terpene synthase 14 (.1.2) Lus10000231 [exp] 569 / 0 AT1G61680 348 / 8e-115 terpene synthase 14 (.1.2) Lus10018280 [exp] 568 / 0 AT5G45170 410 / 1e-136 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10007622 [exp] 360 / 5e-122 AT4G16740 191 / 7e-58 terpene synthase 03 (.1.2) Lus10033643 [exp] 255 / 3e-77 AT4G16730 356 / 2e-115 terpene synthase 02 (.1) Lus10018390 [exp] 246 / 5e-75 AT4G16730 330 / 5e-107 terpene synthase 02 (.1) Lus10007624 [exp] 244 / 8e-74 AT4G16740 334 / 8e-108 terpene synthase 03 (.1.2) Lus10031590 [exp] 243 / 2e-73 AT5G23960 378 / 3e-125 terpene synthase 21 (.1.2) Lus10025922 [exp] 241 / 4e-72 AT3G25810 353 / 3e-114 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G030200 [exp] 441 / 3e-150 AT1G61680 465 / 2e-159 terpene synthase 14 (.1.2) Potri.004G030400 [exp] 439 / 8e-150 AT1G61680 466 / 8e-160 terpene synthase 14 (.1.2) Potri.011G032300 [exp] 326 / 1e-106 AT1G61680 350 / 1e-115 terpene synthase 14 (.1.2) Potri.015G032100 [exp] 283 / 1e-88 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2) Potri.015G085500 [exp] 282 / 2e-88 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.019G023006 [exp] 268 / 8e-83 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023008 [exp] 267 / 1e-82 AT3G25830 535 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.007G119700 [exp] 257 / 9e-78 AT4G16740 438 / 8e-147 terpene synthase 03 (.1.2) Potri.011G031800 [exp] 250 / 5e-76 AT3G25830 382 / 5e-126 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G022338 [exp] 249 / 2e-75 AT3G25830 483 / 8e-165 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10035240 pacid=23162442 polypeptide=Lus10035240 locus=Lus10035240.g ID=Lus10035240.BGIv1.0 annot-version=v1.0 ATGAGCAGCATGACGGAGACGCATAGTCAGAGACTGGCGGAAGCAAGGCTTATATTCAAGCAAATGGAAGAAGAAGACAAGTACTCCATTGATATCTTGT TAATGATCGATGCCCTCCAACGCTTGGGGCTGGACCTCCACTTCCATGAAGAAATATCCACTGTTTTGAAGCATCACTACTCTCGTATGGCAACCCCAAA TTCCTGCAGCGATGATGATCTTTTCCATACATCATTGCGCTTCCGATTGTTAAGACAACAAGGTTTTCCCATCTCATCAGATGTGTTTGAGAAATTTCGA AACGGGAAGGAAAAAAAGTTTAGTGAATATAACAACATGAGAGGATTGATGGAACTATACGAAGCATCATTCTGGGGCACGACAGGTGAAGCCATTATGC ATGAGGCTGGGGAATTTAGTGCCAACATGATGATGATGCTCCAATTTTCAACCCATCATTTTATTATTAATTACACCTTCAGACATCCTTGTCATAGAAG CTTACCCAGATTTCACGTTAAAAACTTTCTCAACAATTTGGAAGGCACAACCAGCTGCTGGTACAACAACACAACACTACTTACGGACCTTATGAAATTG GACTTCAACATTAATCAGTCCATCCACCGCCAAGAAGTTACCCTTGTTTCCAAGTGGTGGAAGGAGCTAGGGTTGGCAGAAGATTTAGAGTTTGCGAGGA ATGAACCAGTGAAGTGGTACATGTGGCCGTTGGCTACCTTGACGGATCCAAAGCTGTCAGAAGAAAGAGTGGAGCTCGCCAAACCTATTTCCTTTGTCTA CCTCATAGACGATATTTTTGATGTCTATGGCTCCCTGGATCAACTCATTCTCTTCACTCAAACTGTTGACAGATGGGACATCACAGCGACAGAGCAATTA CCCGAATACATGAGGAAATGCTTTATGGCACTTGATGAAGTTACTCATCAATTTGCATGCAAACTCTACGAACGAAAAGGATATAACCCAATACACTACC TACAACAAGCATGGGCGAAACTGTTGAAAGCATTTCTAGTGGAAGCCAAGTGGTTGAAATCAGGAGAGCTTCCAAAGTCGGAAGACTACTTGCAAAACGG AATTGTGAGTTCTGGTGTCCAACTAGTTCTACTTCACCTCTTCTTCCTTTTGGGTGATGGCCTAACACCAACAAACCTTGACCTCGTTAACGGCAATAAC CCTCCCGTCATTTCTTCAATCGCCAAAATTCTCCGGCTATGCGACGATCTATCATCTACGAATGAGGAACACTGTGGTGATGATGGATCATACGTGGATT GCTATATGAAGGAGCATCACGGGTCGTCATTGCTTAGTGCAAGGGGACATGTTATACAAATGATCGAAGAAACGTGGAAGCAATTCAACGACGAATGTCT ATCTCCGACAATAAAGCTTCCGCCGGCTTTCACCAGGGCCGCCCATAATTCTGCCAAAATGGTCCCATTGATGTATGGATATGATCAAGGCAAGGGTCAT GATAATGAAACAACTCTTAGCCTAAAGGACCATATCAACTCCATGCTCTTTGAAACCATGCCCATATGA
AA sequence Show only first row Show all	>Lus10035240 pacid=23162442 polypeptide=Lus10035240 locus=Lus10035240.g ID=Lus10035240.BGIv1.0 annot-version=v1.0 MSSMTETHSQRLAEARLIFKQMEEEDKYSIDILLMIDALQRLGLDLHFHEEISTVLKHHYSRMATPNSCSDDDLFHTSLRFRLLRQQGFPISSDVFEKFR NGKEKKFSEYNNMRGLMELYEASFWGTTGEAIMHEAGEFSANMMMMLQFSTHHFIINYTFRHPCHRSLPRFHVKNFLNNLEGTTSCWYNNTTLLTDLMKL DFNINQSIHRQEVTLVSKWWKELGLAEDLEFARNEPVKWYMWPLATLTDPKLSEERVELAKPISFVYLIDDIFDVYGSLDQLILFTQTVDRWDITATEQL PEYMRKCFMALDEVTHQFACKLYERKGYNPIHYLQQAWAKLLKAFLVEAKWLKSGELPKSEDYLQNGIVSSGVQLVLLHLFFLLGDGLTPTNLDLVNGNN PPVISSIAKILRLCDDLSSTNEEHCGDDGSYVDCYMKEHHGSSLLSARGHVIQMIEETWKQFNDECLSPTIKLPPAFTRAAHNSAKMVPLMYGYDQGKGH DNETTLSLKDHINSMLFETMPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10035240 [exp]	0	1
AT3G13810	C2H2ZnF	ATIDD11	indeterminate(ID)-domain 11 (....		Lus10004840 [exp]	4.0	0.7495
					Lus10027443 [exp]	4.2	0.7512
AT1G48745			unknown protein		Lus10013499 [exp]	7.3	0.6802
AT4G21870			HSP20-like chaperones superfam...		Lus10007666 [exp]	8.7	0.7303
AT1G05700			Leucine-rich repeat transmembr...		Lus10023463 [exp]	8.7	0.6898
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Lus10032498 [exp]	16.4	0.7151
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10014084 [exp]	16.7	0.6912
					Lus10029487 [exp]	19.2	0.6752
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10014219 [exp]	21.0	0.6772
AT2G14080			Disease resistance protein (TI...		Lus10023330 [exp]	21.5	0.6948

Compare expression of checked genes

Lus10035240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.