Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29420 172 / 8e-54 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) AT3G09270 166 / 3e-51 ATGSTU8 glutathione S-transferase TAU 8 (.1) AT2G29480 149 / 7e-45 GST20, ATGSTU2 GLUTATHIONE S-TRANSFERASE 20, glutathione S-transferase tau 2 (.1) AT5G62480 149 / 2e-44 GST14B, ATGSTU9 GLUTATHIONE S-TRANSFERASE 14B, GLUTATHIONE S-TRANSFERASE 14, glutathione S-transferase tau 9 (.1.2) AT2G29460 148 / 2e-44 GST22, ATGSTU4 GLUTATHIONE S-TRANSFERASE 22, glutathione S-transferase tau 4 (.1) AT1G10370 147 / 6e-44 GST30B, ATGSTU17, ERD9 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) AT1G74590 146 / 2e-43 ATGSTU10 glutathione S-transferase TAU 10 (.1) AT2G29450 144 / 7e-43 ATGSTU1, AT103-1A, ATGSTU5 ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 1, glutathione S-transferase tau 5 (.1) AT2G29490 142 / 3e-42 GST19, ATGSTU1 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1) AT1G78370 141 / 6e-42 ATGSTU20 glutathione S-transferase TAU 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021102 [exp] 187 / 2e-59 AT3G09270 245 / 2e-82 glutathione S-transferase TAU 8 (.1) Lus10021103 [exp] 186 / 3e-59 AT3G09270 250 / 1e-84 glutathione S-transferase TAU 8 (.1) Lus10001491 [exp] 166 / 2e-51 AT3G09270 185 / 5e-59 glutathione S-transferase TAU 8 (.1) Lus10016471 [exp] 160 / 6e-49 AT2G29420 234 / 8e-78 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10040761 [exp] 157 / 1e-47 AT2G29420 233 / 1e-77 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10041654 [exp] 156 / 2e-47 AT2G29420 175 / 1e-54 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10040764 [exp] 155 / 3e-47 AT2G29420 229 / 6e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10007897 [exp] 154 / 1e-46 AT2G29420 187 / 1e-59 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10040727 [exp] 154 / 1e-46 AT2G29420 216 / 6e-71 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G061200 [exp] 258 / 8e-88 AT3G09270 202 / 8e-66 glutathione S-transferase TAU 8 (.1) Potri.002G254000 [exp] 239 / 5e-80 AT2G29420 167 / 1e-51 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.008G174900 [exp] 238 / 1e-79 AT2G29420 184 / 1e-58 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.008G175000 [exp] 236 / 4e-79 AT2G29420 177 / 7e-56 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G060900 [exp] 236 / 5e-79 AT2G29420 175 / 7e-55 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061700 [exp] 234 / 4e-78 AT2G29420 172 / 1e-53 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061800 [exp] 230 / 1e-76 AT2G29420 187 / 1e-59 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061301 [exp] 226 / 3e-75 AT2G29420 202 / 9e-66 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.008G175100 [exp] 225 / 2e-74 AT2G29420 169 / 1e-52 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061600 [exp] 224 / 2e-74 AT2G29420 172 / 7e-54 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10035241 pacid=23162517 polypeptide=Lus10035241 locus=Lus10035241.g ID=Lus10035241.BGIv1.0 annot-version=v1.0 ATGGCAGACATCAAACTGTTAGGAACATGGCCTAGCCCATTCAGCTACAGAGTAATTTGGGCACTGAAATTGAAAGGGATAGACTATGAGTACATCCCAC AAGACCTCTCCAAAAAAAGCTCACTCCTCCTCCAATCCAACCCTGTCCACAAGAAAATCCCAGTCCTAATCCATGGAGGAAAACCCATTTCCGAATCCAT GATTATACTCGAGTACTTGGACGAGTCATTCCCTGAGACCTACCCATTGATGCCAACCGATCCTTACGAGAAGGCCATGGCTAGATTCTGGATCAAATTT GCAGAGGAGAAGCTTTCATCTGCCTTCATGATATTCAGGACTTCAGGAGAAGAGCAGGAGAAGGCAGTCAGGGAGACGTTGGAGGTATTGAAAGTGCTGG AAGAACATGCCTTTGGACCGTTAGGAACTAATTATTTCGGAGGTGATAAAATGGTAAACCTTGTCGATCTTGCTTATGGGGTGATGGGTTATTGGTTGGA TGCTATTGAGGACTGTACTGGAGTAAAAGTGTTTGATCCTCTCAAGTTCCCTCGTTTCCATGGCTGGATTGGTAGGTTTAATGATGCTTCTGTTATTAGA GACAATCTTCCTGAACGTGGAGAGTTGTTTGCTTACTTCAAACGTCGCAGGGGAATGATACTCTCTGCTGCCTCCAACTGA
AA sequence Show only first row Show all	>Lus10035241 pacid=23162517 polypeptide=Lus10035241 locus=Lus10035241.g ID=Lus10035241.BGIv1.0 annot-version=v1.0 MADIKLLGTWPSPFSYRVIWALKLKGIDYEYIPQDLSKKSSLLLQSNPVHKKIPVLIHGGKPISESMIILEYLDESFPETYPLMPTDPYEKAMARFWIKF AEEKLSSAFMIFRTSGEEQEKAVRETLEVLKVLEEHAFGPLGTNYFGGDKMVNLVDLAYGVMGYWLDAIEDCTGVKVFDPLKFPRFHGWIGRFNDASVIR DNLPERGELFAYFKRRRGMILSAASN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10035241 [exp]	0	1
AT4G19880			Glutathione S-transferase fami...		Lus10036209 [exp]	1.7	0.9765
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10031388 [exp]	2.8	0.9802
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Lus10015049 [exp]	4.9	0.9792
AT5G62150			peptidoglycan-binding LysM dom...		Lus10015011 [exp]	6.0	0.9730
AT2G41380			S-adenosyl-L-methionine-depend...		Lus10001155 [exp]	7.5	0.9684
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Lus10036086 [exp]	7.7	0.9713
AT2G18210			unknown protein		Lus10028324 [exp]	9.8	0.9708
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Lus10002379 [exp]	9.9	0.9682
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10005951 [exp]	11.6	0.9619
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10001210 [exp]	12.5	0.9624

Compare expression of checked genes

Lus10035241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.