Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23980 395 / 3e-126 KOS1, BLI KOLD SENSITIV 1, BLISTER (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023694 [exp] 1348 / 0 AT3G23980 447 / 1e-146 KOLD SENSITIV 1, BLISTER (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G174800 [exp] 568 / 0 AT3G23980 407 / 8e-132 KOLD SENSITIV 1, BLISTER (.1) Potri.010G062000 [exp] 545 / 0 AT3G23980 389 / 2e-124 KOLD SENSITIV 1, BLISTER (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035243 pacid=23162468 polypeptide=Lus10035243 locus=Lus10035243.g ID=Lus10035243.BGIv1.0 annot-version=v1.0 ATGGCGTCGGCTCAGGTGTTGCGTAAACAGGAGCATCTCCAAGCTGGTAAACGGCGGCTGGAAGAGTTCCGCAAGAAGAAAGCAGCAGAGCGAGCAAAGA AAGCTGGGGCTACTACTGTGCAATCTCAGCCTTCTGATGTTATCACAGAAGAGAAAATACCTTTGGAGATAGAGCAAGTACGGGTTACAGATTCCGATGG AGTTGGTACCTCTGGTTCAGCTGCTGGAACTTTTGAAGTATCAAGTTACAGAAACGACAAGGGAGATGATATGACTAGTGAAGTTGAACACAGGCCTGCG AAAGCTATGAATGCTAAGCCGTCTACAGTCAATGATTTTAGTACAATATTATCAGATATAGGTAAGAGGAACCTTGACAATGATGATTTTAAGAGATCAG ATGTTCCAGGCGTAGCCATAACACATGTTACCAAGTATGGTCAGATGAATGGGGTGCACGAGTCTAGCACATATGGTTATGGACATTCTGTACTCCCAGA TGGGGTTCTATCGGATCATTCTAAGAATCCACAGGCCATCCAAGGTTCCGATGGTATTTTTACTCGGTACAGTCATTATGGGGCAAATCTTTCCCACCGA GAAGAAAACAAAACTTCATCAAGGGACTCAATGTTTACGAATGCTGCTTCTCAGATATCTTCTCTCAATCGATATTCTGTCCTGTCTAAGTTGGAAGCTA AGCCCGTTGACAACAGTGAGCCTAATACCAACTTCAGCATAAGAGGTTCAAGTCATGTAGCTGAAAAAGACACGCATAAAACATTGCAGATAGGTGATTC TACAACAGACTTTGAGCAAAAATATTTGACTAGCCCGTTCCCTGAAGTGCATGCTGATTTCAATCAAACTTCTGAATCCACCTTGTTCAATTCAGATGCC AAGATCTCCTCAAATCACACATCTCTATATGCTGGTCAATATGAAACTAATTCCAGAAAATCCCGTCCATCTTTCCTTGATTCTATCAATGTGACAAGGC CTACTATGGGATCTCCATTATCACAAACAAAACCGTATGAATCTTTCATGTCTGTTACCTTGACTTCAAATAGCACAGATGCACTAGGGTCATCCACTGT TAGTAAGCAATCTGTCGAGACTGCAACTGGGGGATTGTTTTCACAGTTCAAATCTTCAAGTGCAACAGATGTACATGAACTTGATGCACCAAGATGGAAG TCTTCGGTATCGTCGTCTAATGGAATTGATGCAACAAGTTCAAATTTCAATGACCTTTATATAGAAGGAAAGCAGAATTTTTATTCATCTCAAAAGAATG AAGATTTTTCAGCTTTGGAACAGCACATAGAAGATTTGACTCGAGAGAAGTTCTCACTGCAACAAGCACTAGAAGCTTCACGCGCATTAGCTGAGTCTTT GGCTGCTGAAAATACTTCATTGACAGATACTTATAACCAACAGAGAAGCAGTGTCAACCATCTGAAGACTGAAATGGAGAAGTTACAAGGAGAAATCAGA GGTCACATGGTGGAACTTGAATCTGTCAGAGTTGAGTATGCAAATGCACAGCTTGAGTGCAATGCAGCTGATGAGCGATCTAAACTATTAGCTTCAGAGG TTATTGGTTTGGAAGAGAAGAACATGTCTGAGCAGTCTGGGGCAGAACAAGATAAGATTTTGTCTGTGATCGATGGCCAACAATTGAGTTGGTGGGGAGC TGGGGATATACTGTTGGCACTCAGACTAAGGTCGAATGAGCTTAAGCTGGAGAGGGAACTTGACAACTGTCATGCTGAAATTGCTTCTTGCAAAAAGAAA ATGTCTAACCTAGAAAGAGAACGCCTGGATTTACATTCAACTATTGATGCTCTTCAAGAAGAGAAAAAGCTCATGCAATCAAAATTGCGGAAAGCTTCAA CTGGTGGAAAATCTGTTGATGCCGGAAAAAGTACTGTTAAAAGGGATATGTCGACATCTACAGAAGATTTAGAAGTTTACCCAGATACATCCAGCCAGGA AACTTATACAGCATCTCTTCCAAGAAACAACGCCCCTAGTTCTTCTGCTTCGCATGAAATTGGACAGCCTGTTGATGAAAACTCTTCTGCATACATTCCA CCAGATCAGATGAGGATGATACAGAATATAAATGAGTTGATGTCTGAGTTAACATTTGAGAAAGAAGAGTTGATGAAAGCGTTGGTATCTGAGTCATCTC AATGTTCCAAATTGAAGGACCTGAACAAGGATTTGTCCCGTAAACTTGAGGCTCAGACTCAAAGATTAGAACTCTTGGCTGCTCAGAGCATGGCCACTGA GAACATCGCGACAAGATTACCAGAGGTCCGCACCATGCAGGAGGAGAATCCTGCATACGCTGATGAAGGAGACGAGGTTGTAGAAATAGTGTTAGGATGG ATAATGAAACTGTTCCCTGGAGGGCCATCAAAAAGAAGAACCAGCAAGCTGCTCTGA
AA sequence Show only first row Show all	>Lus10035243 pacid=23162468 polypeptide=Lus10035243 locus=Lus10035243.g ID=Lus10035243.BGIv1.0 annot-version=v1.0 MASAQVLRKQEHLQAGKRRLEEFRKKKAAERAKKAGATTVQSQPSDVITEEKIPLEIEQVRVTDSDGVGTSGSAAGTFEVSSYRNDKGDDMTSEVEHRPA KAMNAKPSTVNDFSTILSDIGKRNLDNDDFKRSDVPGVAITHVTKYGQMNGVHESSTYGYGHSVLPDGVLSDHSKNPQAIQGSDGIFTRYSHYGANLSHR EENKTSSRDSMFTNAASQISSLNRYSVLSKLEAKPVDNSEPNTNFSIRGSSHVAEKDTHKTLQIGDSTTDFEQKYLTSPFPEVHADFNQTSESTLFNSDA KISSNHTSLYAGQYETNSRKSRPSFLDSINVTRPTMGSPLSQTKPYESFMSVTLTSNSTDALGSSTVSKQSVETATGGLFSQFKSSSATDVHELDAPRWK SSVSSSNGIDATSSNFNDLYIEGKQNFYSSQKNEDFSALEQHIEDLTREKFSLQQALEASRALAESLAAENTSLTDTYNQQRSSVNHLKTEMEKLQGEIR GHMVELESVRVEYANAQLECNAADERSKLLASEVIGLEEKNMSEQSGAEQDKILSVIDGQQLSWWGAGDILLALRLRSNELKLERELDNCHAEIASCKKK MSNLERERLDLHSTIDALQEEKKLMQSKLRKASTGGKSVDAGKSTVKRDMSTSTEDLEVYPDTSSQETYTASLPRNNAPSSSASHEIGQPVDENSSAYIP PDQMRMIQNINELMSELTFEKEELMKALVSESSQCSKLKDLNKDLSRKLEAQTQRLELLAAQSMATENIATRLPEVRTMQEENPAYADEGDEVVEIVLGW IMKLFPGGPSKRRTSKLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23980		KOS1, BLI	KOLD SENSITIV 1, BLISTER (.1)		Lus10035243 [exp]	0	1
AT2G25730			unknown protein		Lus10007687 [exp]	3.6	0.9128
AT5G13300		AGD3, VAN3, SFC	ASCULAR NETWORK DEFECTIVE 3, S...		Lus10002572 [exp]	4.7	0.8606
AT3G07160		CALS9, ATGSL10	glucan synthase-like 10 (.1)		Lus10042959 [exp]	6.2	0.9016
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10017398 [exp]	10.0	0.8912
AT3G06620			PAS domain-containing protein ...		Lus10040540 [exp]	10.6	0.8245
AT3G08960			ARM repeat superfamily protein...		Lus10007842 [exp]	11.3	0.8460
AT2G48060			unknown protein		Lus10008175 [exp]	11.3	0.8661
AT1G50030		TOR	target of rapamycin (.1.2)		Lus10035661 [exp]	11.5	0.9055
AT3G01320		SNL1	SIN3-like 1 (.1.2)		Lus10014504 [exp]	12.7	0.8802
AT5G13010		EMB3011	embryo defective 3011, RNA hel...		Lus10000873 [exp]	12.8	0.8753

Compare expression of checked genes

Lus10035243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.