Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04610 672 / 0 YUC3 YUCCA 3 (.1) AT2G33230 647 / 0 YUC7 YUCCA 7 (.1) AT4G28720 591 / 0 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1) AT5G43890 586 / 0 YUCCA5, SUPER1, YUC5 YUCCA5, SUPPRESSOR OF ER 1, Flavin-binding monooxygenase family protein (.1) AT1G04180 575 / 0 YUC9 YUCCA 9 (.1) AT5G25620 502 / 1e-177 YUC6 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) AT5G11320 489 / 9e-173 YUC4 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) AT4G13260 478 / 3e-168 YUC2 YUCCA2, Flavin-binding monooxygenase family protein (.1) AT4G32540 471 / 1e-165 YUC1, YUC YUCCA 1, YUCCA, Flavin-binding monooxygenase family protein (.1) AT1G21430 348 / 2e-117 YUC11 Flavin-binding monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023695 [exp] 818 / 0 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10043142 [exp] 634 / 0 AT1G04610 599 / 0.0 YUCCA 3 (.1) Lus10022851 [exp] 599 / 0 AT4G28720 666 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10011274 [exp] 578 / 0 AT4G28720 643 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10008092 [exp] 494 / 9e-175 AT5G11320 575 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10013125 [exp] 494 / 2e-174 AT5G11320 579 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10023637 [exp] 479 / 7e-169 AT4G13260 542 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10011093 [exp] 474 / 2e-166 AT4G13260 566 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10007671 [exp] 464 / 4e-162 AT4G13260 518 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G174600 [exp] 708 / 0 AT1G04610 686 / 0.0 YUCCA 3 (.1) Potri.010G062400 [exp] 697 / 0 AT1G04610 657 / 0.0 YUCCA 3 (.1) Potri.002G254200 [exp] 630 / 0 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Potri.006G243400 [exp] 514 / 0 AT5G25620 608 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.018G036800 [exp] 508 / 1e-179 AT5G25620 576 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.006G248200 [exp] 496 / 2e-175 AT5G11320 598 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.007G028200 [exp] 484 / 1e-170 AT5G25620 495 / 5e-175 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.018G033200 [exp] 483 / 3e-170 AT5G11320 546 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.002G207400 [exp] 356 / 7e-121 AT1G48910 429 / 3e-150 YUCCA 10, Flavin-containing monooxygenase family protein (.1) Potri.005G186100 [exp] 341 / 6e-115 AT1G21430 448 / 2e-157 Flavin-binding monooxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00743 [flax] [poplar] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Lus10035244 pacid=23162389 polypeptide=Lus10035244 locus=Lus10035244.g ID=Lus10035244.BGIv1.0 annot-version=v1.0 ATGGAAGATGCCGCCTTCTTCTCAATCTCATCTACCCGCCGCTGCATTTGGGTTAACGGTCCCGTCATCGTCGGTGCCGGCCCATCGGGCTTGGCCGTCG GAGCCGGCCTCAAAAGGGAAGGAGTCCCTTTCGTCATCCTGGAGCGAGCAAACTGTATTGCCTCCCTCTGGCAAAACAGAACCTACGACCGCCTCAAACT CCACCTCCCCAAGCAGTTCTGCCAGCTCCCTAATTTCCCCTTCCCTGAAGATTTCCCAGAATACCCTTCCAAGTTCCAGTTCATCTCCTACCTCGAATCC TACGCCCGCCATTTCGACATCTCCCCTAACTTCAACGACACCGTTCAGTCCGCCAAATACGACGACACCTTTGGCCTCTGGCGGGTCAAGACCGTTTCCC AAAACGGCGGTCGGACCGAGGAGATCGAGTATATCTGTAGGTGGCTGGTTGTGGCCACCGGGGAGAATGCGGAGAAGGTTGTCCCGGAGTTTGAAGGCTT GGAAAAGTTCTCCGGTGCCGTCTCCCACGCTTGTGATTATAGATCCGGTGAGAGCTACCGCGGCCAGCGGGTGCTAGTCGTGGGTTGTGGGAATTCCGGA ATGGAAGTCTCCCTTGATCTCTGCAACCACAATGCCAGCCCTTCAATGGTGGTTAGGAGCTCGGTTCATGTATTGCCTAGGGAAATTATGGGGAAATCTA CGTTTGAGTTGGCAGTGACATTGATGAAATGGATGCCGCTATGGATGGTTGACAAAGTATTGCTGGGTGTAGCGAGGGTGATGCTGGGGAATCTGGAGAA ACATGGACTGAAAAGGCCAAGCCTTGGGCCGTTGGAGCACAAGAACACTCAAGGGAAGACTCCAGTTTTGGACATTGGGGCTCTGGCCAAAATCAGATCC GGTCAGGTGAAGGTTGTACCCGGAATCAAGAAATTCGGAAGTGGGAAAGTTGAGCTTGTGAATGGACAAGTTATGGAGATAGATTCCGTGATTCTGGCAA CTGGGTATTGCAGCAATGTTCCTTCATGGCTAAAGGAGAATGACTTCTTTTCAGAGGATGGAGTGCCAAAGAACCCATTCCCAAATGGTTGGAAAGGGAA AGCAGGGCTATATGCAGTGGGTTTCACAAGGAGAGGGCTGTCAGGTGCATCTCTTGATGCTATTAGTGTGGCATTGGACATTGCAAAAAGCTGGAAAGAA GAGACCAAACAGAAGAAGAAAACCATGGCTACCAGGCACAGGAGATGCATTTCCCACTTCTAA
AA sequence Show only first row Show all	>Lus10035244 pacid=23162389 polypeptide=Lus10035244 locus=Lus10035244.g ID=Lus10035244.BGIv1.0 annot-version=v1.0 MEDAAFFSISSTRRCIWVNGPVIVGAGPSGLAVGAGLKREGVPFVILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPEYPSKFQFISYLES YARHFDISPNFNDTVQSAKYDDTFGLWRVKTVSQNGGRTEEIEYICRWLVVATGENAEKVVPEFEGLEKFSGAVSHACDYRSGESYRGQRVLVVGCGNSG MEVSLDLCNHNASPSMVVRSSVHVLPREIMGKSTFELAVTLMKWMPLWMVDKVLLGVARVMLGNLEKHGLKRPSLGPLEHKNTQGKTPVLDIGALAKIRS GQVKVVPGIKKFGSGKVELVNGQVMEIDSVILATGYCSNVPSWLKENDFFSEDGVPKNPFPNGWKGKAGLYAVGFTRRGLSGASLDAISVALDIAKSWKE ETKQKKKTMATRHRRCISHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10035244 [exp]	0	1
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10033939 [exp]	6.5	0.9421
AT4G34810			SAUR-like auxin-responsive pro...		Lus10012184 [exp]	19.9	0.9402
AT4G34810			SAUR-like auxin-responsive pro...		Lus10042378 [exp]	20.0	0.9134
AT2G20520		FLA6	FASCICLIN-like arabinogalactan...		Lus10033651 [exp]	20.0	0.9165
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10024854 [exp]	21.5	0.9227
AT5G14020			Endosomal targeting BRO1-like ...		Lus10031997 [exp]	24.4	0.9361
AT3G24450			Heavy metal transport/detoxifi...		Lus10017730 [exp]	27.0	0.9181
AT5G11420			Protein of unknown function, D...		Lus10025753 [exp]	28.2	0.9339
AT2G20520		FLA6	FASCICLIN-like arabinogalactan...		Lus10017696 [exp]	29.4	0.9182
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Lus10033227 [exp]	30.2	0.9204

Compare expression of checked genes

Lus10035244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.