Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43900 699 / 0 XI-6, XI-2, ATMYA2, MYA2 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) AT1G04160 688 / 0 XI-B, XI-8, ATXIB, XIB MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) AT1G04600 659 / 0 ATXIA, XIA myosin XI A (.1) AT4G28710 637 / 0 ATXIH, XIH MYOSIN XI H, Myosin family protein with Dil domain (.1) AT2G33240 633 / 0 ATXID, XID myosin XI D (.1) AT2G31900 604 / 0 ATMYO5, PCR11, ATXIF, XIF MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) AT1G08730 600 / 0 PCR43, ATXIC, XIC MYOSIN XI C, Myosin family protein with Dil domain (.1) AT5G20490 599 / 0 XI-17, ATXIK, XIK MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) AT2G20290 590 / 0 ATXIG, XIG MYOSIN XI G, myosin-like protein XIG (.1) AT1G54560 587 / 0 PCR1, ATXIE, XIE MYOSIN XI E, Myosin family protein with Dil domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023696 [exp] 834 / 0 AT5G43900 1841 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10032597 [exp] 804 / 0 AT5G43900 1925 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10022850 [exp] 682 / 0 AT5G43900 2380 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10021570 [exp] 621 / 0 AT5G20490 2587 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10005521 [exp] 610 / 0 AT1G54560 2686 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Lus10017160 [exp] 574 / 0 AT5G20490 2476 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10014753 [exp] 525 / 7e-176 AT3G58160 1289 / 0.0 MYOSIN XI-16, MYOSIN A3, MYOSIN XI J, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003315 [exp] 459 / 1e-145 AT5G20490 2479 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10043153 [exp] 455 / 8e-144 AT5G43900 1250 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G254300 [exp] 719 / 0 AT1G04160 2412 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Potri.008G174500 [exp] 709 / 0 AT5G43900 2206 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Potri.001G233100 [exp] 621 / 0 AT2G31900 2385 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.001G199200 [exp] 619 / 0 AT5G20490 2448 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.006G145700 [exp] 618 / 0 AT5G20490 2580 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.009G025300 [exp] 609 / 0 AT2G31900 2363 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.019G013800 [exp] 602 / 0 AT1G54560 2616 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.013G043900 [exp] 595 / 0 AT1G54560 2512 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.002G041800 [exp] 570 / 0 AT1G08730 1447 / 0.0 MYOSIN XI C, Myosin family protein with Dil domain (.1) Potri.006G220000 [exp] 509 / 8e-165 AT4G33200 2352 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif CL0023 [flax] [poplar] P-loop_NTPase PF00063 [flax] [poplar] Myosin_head Myosin head (motor domain)
Representative CDS sequence Show only first row Show all	>Lus10035246 pacid=23162484 polypeptide=Lus10035246 locus=Lus10035246.g ID=Lus10035246.BGIv1.0 annot-version=v1.0 ATGTGTTCATTTATTTCCTTCGTTATCTTCCTATTTCAGGACATAAAGAAGTTCAAAGTGGGAAATGCTAGGTCATTCCGCTACCTTAATCAATCAGAGT GCATTGAATTGGATGGAATAGATGACCCGAAAGAATATCGTGTGACCAGAAAAGCCATGGAAGTTGTTGGGATAAGTGCTCAAGAGCAGGATGCAATATT CCGAGTTGTTGCTGCAGTTCTACATCTAGGAAACGTAGTGTTTGCAAAAGGAAGTGAACCGGATTCTTCTGAACCTAAGGATGATGATGCCCGCTTCCAT CTCAAGACAGCAGCTGAACTTTTCAATTGTGATGAAAAGGGTCTCGAGGACTCCCTGTGCAAACGTGTAATTGTGACCCGTGATGATGTCATAAAGAAGG TCCTTGATCCTGTAGCTGCGACTCTCAATAGAGATGCTCTGGCAAAAATTGTTTATTCAAGACTATTTGATTGTTTTGAGCAATTTTGTATAAATTTAAC AAATGAAAAGTTGCAGCAGCATTTTAATCAGTACGTATTTAAGATGGAGCAAGAAGAATACACCAAAGAACAGATTAACTGGAGCTATATCGAGTTCATC GACAATCAAGATGTTCTTGATATGGTTGAAAAGAAACCCTGCGGTATCCTTGCTCTTCTTGACGAGGCTTGTATGTTTCCTAGATCAACTCATGAAACAT TTGCACAGAAGCTATATCAGACTTTTAAGGATCACAAACGGTTCAGCAAGCCTAAGTTGGCACGCACTGACTTCACTGTTTGTCATTACGCCGGGGATGC GAGTATTCTATGTTTTCACATGGAACAAAAATTAACTCATCAGAATGCTGATTCTTTCTATAGAAATAAAAAGGTAACATACCAAACTGAATTCTTTTTG GATAAAAACAAAGACTATGTAGTTGCTGAACATCAAGCTCTCCTCAGTCAGTCCAAGTGCTCGTTTGTTTCAGGCCTATTCCCTCCCTTGCAGGAATCTT CTAAATCATCCAAGTTTTCATCGATAGGTGCTCAATTTAAGCAACAACTGCAATCCCTGCTTGAAACATTGAATGCCACGGAACTGCTTTATATCCGTTG TGTAAAGCCTAATAATGCTCTTAAGCCATACATCTTTGAGAATCCCAATGTCTTACAGCAGCTGCGGTGTGGAGGTGTAATGAAGGAAATCAGAATTATT TGTGCTGGGTATCCCACTAGAAAGATGTTTAAAGAGTTTATTGCTCGATTCGGGATTCTAGCGACAGATATTTCAAATTTGAGTAGCAACAATGAGGTTA CGGCTTGCAAGAGGATTCTAGAAAAGGTGAAACTTGAAGGTTATCAGGTGAAAAATGATTCTCTTCTGTATCCGATGAATAAGCGTATTCGTGAAATTGC AAGGCATCGGTTTGAATGCCTCAGACGTGAAGATGCTTGCATAAAGATCCAGAAGTACTATCGCAGGTTTCTAGCAAGGAAAGCTTATAACAGTTTGTGC TCCTCAACATTGTGCATTCAGGCCGGTATGCGTGGAATGGCTGCTCGCATTGAACTCTTATTCCGACGGAAGAAGAAAGCTGCAATTTTGATCCAGAGTC CATGCAGAAAATATTTGGCACGAAAGCACTATTTGAGGTTGAAGAAGGCTACGATTGTCACACAGTGTGCCTGGAGGCGCAGATTAGCACGTCGAGAACT GCGAAAGCTTAGGATGGTCAAGTCGTCTCTCTCTTTGTTTTGTTTTTATTCCCTCTTTGAAACTGTTTCCTTTTCTCCCTTATTCACAATTAGGTTCCAT AACCAGTAG
AA sequence Show only first row Show all	>Lus10035246 pacid=23162484 polypeptide=Lus10035246 locus=Lus10035246.g ID=Lus10035246.BGIv1.0 annot-version=v1.0 MCSFISFVIFLFQDIKKFKVGNARSFRYLNQSECIELDGIDDPKEYRVTRKAMEVVGISAQEQDAIFRVVAAVLHLGNVVFAKGSEPDSSEPKDDDARFH LKTAAELFNCDEKGLEDSLCKRVIVTRDDVIKKVLDPVAATLNRDALAKIVYSRLFDCFEQFCINLTNEKLQQHFNQYVFKMEQEEYTKEQINWSYIEFI DNQDVLDMVEKKPCGILALLDEACMFPRSTHETFAQKLYQTFKDHKRFSKPKLARTDFTVCHYAGDASILCFHMEQKLTHQNADSFYRNKKVTYQTEFFL DKNKDYVVAEHQALLSQSKCSFVSGLFPPLQESSKSSKFSSIGAQFKQQLQSLLETLNATELLYIRCVKPNNALKPYIFENPNVLQQLRCGGVMKEIRII CAGYPTRKMFKEFIARFGILATDISNLSSNNEVTACKRILEKVKLEGYQVKNDSLLYPMNKRIREIARHRFECLRREDACIKIQKYYRRFLARKAYNSLC SSTLCIQAGMRGMAARIELLFRRKKKAAILIQSPCRKYLARKHYLRLKKATIVTQCAWRRRLARRELRKLRMVKSSLSLFCFYSLFETVSFSPLFTIRFH NQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04600		ATXIA, XIA	myosin XI A (.1)		Lus10035246 [exp]	0	1
AT1G64870			unknown protein		Lus10009296 [exp]	1.4	0.8001
AT3G59100		ATGSL11	glucan synthase-like 11 (.1)		Lus10020751 [exp]	4.6	0.8327
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10029379 [exp]	17.5	0.7109
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10033510 [exp]	19.6	0.7616
AT5G62890			Xanthine/uracil permease famil...		Lus10029191 [exp]	19.8	0.7653
AT5G39420		CDC2CAT	CDC2C (.1)		Lus10005228 [exp]	21.4	0.7685
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10025872 [exp]	22.2	0.7299
					Lus10024213 [exp]	22.4	0.7547
AT3G14570		ATGSL4, ATGSL04	glucan synthase-like 4 (.1.2)		Lus10042478 [exp]	25.5	0.7449
AT5G20950			Glycosyl hydrolase family prot...		Lus10018102 [exp]	26.5	0.6908

Compare expression of checked genes

Lus10035246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.