Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21330 466 / 3e-165 FBA1 fructose-bisphosphate aldolase 1 (.1.2.3) AT4G38970 462 / 9e-164 FBA2 fructose-bisphosphate aldolase 2 (.1.2) AT2G01140 394 / 4e-137 PDE345 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) AT3G52930 249 / 9e-81 Aldolase superfamily protein (.1) AT2G36460 249 / 9e-81 Aldolase superfamily protein (.1.2) AT4G26520 249 / 2e-80 Aldolase superfamily protein (.1) AT4G26530 246 / 2e-79 Aldolase superfamily protein (.1.2) AT5G03690 231 / 5e-73 Aldolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007940 [exp] 522 / 0 AT2G01140 507 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Lus10034619 [exp] 407 / 2e-140 AT2G01140 457 / 1e-158 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Lus10031088 [exp] 350 / 2e-119 AT4G38970 674 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Lus10035473 [exp] 350 / 2e-119 AT4G38970 671 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Lus10013477 [exp] 339 / 3e-114 AT2G01140 481 / 1e-168 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Lus10032956 [exp] 299 / 4e-100 AT4G26530 635 / 0.0 Aldolase superfamily protein (.1.2) Lus10014373 [exp] 239 / 1e-76 AT2G36460 629 / 0.0 Aldolase superfamily protein (.1.2) Lus10023870 [exp] 236 / 1e-75 AT2G36460 630 / 0.0 Aldolase superfamily protein (.1.2) Lus10027717 [exp] 221 / 1e-69 AT3G52930 622 / 0.0 Aldolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G124100 [exp] 454 / 7e-161 AT4G38970 703 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.004G162400 [exp] 454 / 9e-161 AT4G38970 704 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.007G015500 [exp] 454 / 2e-160 AT4G38970 703 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.010G117900 [exp] 415 / 3e-145 AT2G01140 697 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Potri.008G125900 [exp] 413 / 1e-144 AT2G01140 700 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Potri.018G090100 [exp] 259 / 2e-84 AT3G52930 620 / 0.0 Aldolase superfamily protein (.1) Potri.001G468100 [exp] 244 / 1e-78 AT4G26530 629 / 0.0 Aldolase superfamily protein (.1.2) Potri.011G165000 [exp] 241 / 2e-77 AT4G26530 628 / 0.0 Aldolase superfamily protein (.1.2) Potri.006G165700 [exp] 241 / 2e-77 AT2G36460 634 / 0.0 Aldolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [flax] [poplar] Peptidase_MH PF00274 [flax] [poplar] Glycolytic Fructose-bisphosphate aldolase class-I
Representative CDS sequence Show only first row Show all	>Lus10035247 pacid=23162433 polypeptide=Lus10035247 locus=Lus10035247.g ID=Lus10035247.BGIv1.0 annot-version=v1.0 ATGGCGTCTTCAGCTACCTTCACCAAGCTCGACGCCGCCTCCTCCACCTGGATCGGCCAAAAGTCCTTCGCTTCCCGCTCCTCTCGAATCGCCCCTTCCC GCGTCAACTTCACCGTCCGCGCTAGCCACTACACCGACGAGCTCGTCAAAACTGCCAAAACGATTGCTTCTCCTGGACGTGGAATCCTAGCTATCGATGA ATCCAATGCTACTTGTGGGAAGAGATTGGACTCGATCGGGTTGGAGAACACTGAGACCAACAGGCAGGCTTACAGACAGCTCTTGCTGACTACTCCTGGT CTTGGTGAATACATCTCTGGTTCTATTCTGTTTGAGGAGACTCTTTACCAGTCTACTACTGATGGCAAGAAGTTTGTTGACTGTTTGGTTGAGCAGAACA TTGTCCCCGGGATCAAAGTTGACAAGGGTTTGGTTCCCCTACCAGGGTCGAACAATGAGTCCTGGTGCCAGGGTTTGGATGGTTTGGCTTCAAGGACTTC CGAGTATTACAAGCAAGGTGCTCGTTTTGCCAAGTGGAGGACAGTTGTGAGCATTCCCTGTGGTCCTTCTGCTCTTGCTGTTAAGGAGGCTGCATGGGGG CTTGCACGATATGCTTCCATCTGCCAGGATAGTGGACTTGTCCCTATCGTGGAGCCAGAGATTCTTCTTGATGGAGACCATGGAATTGACAGGACCCTTG AGTTTTTGTCAGGAGGACAATCCGAGATGGAAGCAACCCTGAACTTAAACGCAATGAACCAGAGCCCCAACCCATGGCACGTGTCTTTCTCATACGCACG AGCACTGCAGAACAGTGTGCTCAAGACCTGGAAAGGACAACCCCAGAACGTCGAGGCGGCACAGAAGGCGCTACTTGTACGTGCCAAGGCAAACTCCCTA GCTCAGCTAGGCAAGTACTCCGTGGAGGGAGAGAGCGAGGAAGCCAAGACCGGCATGTTCGTCAAGGGATATACCTACTAA
AA sequence Show only first row Show all	>Lus10035247 pacid=23162433 polypeptide=Lus10035247 locus=Lus10035247.g ID=Lus10035247.BGIv1.0 annot-version=v1.0 MASSATFTKLDAASSTWIGQKSFASRSSRIAPSRVNFTVRASHYTDELVKTAKTIASPGRGILAIDESNATCGKRLDSIGLENTETNRQAYRQLLLTTPG LGEYISGSILFEETLYQSTTDGKKFVDCLVEQNIVPGIKVDKGLVPLPGSNNESWCQGLDGLASRTSEYYKQGARFAKWRTVVSIPCGPSALAVKEAAWG LARYASICQDSGLVPIVEPEILLDGDHGIDRTLEFLSGGQSEMEATLNLNAMNQSPNPWHVSFSYARALQNSVLKTWKGQPQNVEAAQKALLVRAKANSL AQLGKYSVEGESEEAKTGMFVKGYTY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10035247 [exp]	0	1
AT1G07940			GTP binding Elongation factor ...		Lus10040378 [exp]	2.8	0.9063
AT3G48990			AMP-dependent synthetase and l...		Lus10027478 [exp]	3.9	0.9109
AT5G13420			Aldolase-type TIM barrel famil...		Lus10032613 [exp]	4.2	0.9235
AT2G31390		STH	pfkB-like carbohydrate kinase ...		Lus10009526 [exp]	4.9	0.9231
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10034144 [exp]	5.3	0.9141
AT4G35630		PSAT	phosphoserine aminotransferase...		Lus10039587 [exp]	5.9	0.9079
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10036739 [exp]	6.5	0.8817
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10034619 [exp]	6.8	0.9364
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Lus10037019 [exp]	7.7	0.8866
AT1G26270			Phosphatidylinositol 3- and 4-...		Lus10000011 [exp]	10.9	0.8833

Compare expression of checked genes

Lus10035247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.