Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47850 482 / 9e-169 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) AT5G18550 315 / 1e-103 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G06410 310 / 1e-101 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G02830 281 / 3e-91 C3HZnF ZFN1 zinc finger protein 1 (.1) AT5G16540 265 / 5e-85 C3HZnF ZFN3 zinc finger nuclease 3 (.1.2.3) AT1G04990 207 / 2e-62 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G48440 201 / 2e-59 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G63260 191 / 6e-56 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT2G32930 189 / 6e-55 C3HZnF ZFN2 zinc finger nuclease 2 (.1.2) AT3G12680 189 / 2e-54 C3HZnF HUA1 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034620 [exp] 719 / 0 AT2G47850 479 / 2e-168 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10007941 [exp] 556 / 0 AT2G47850 524 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10013476 [exp] 546 / 0 AT2G47850 532 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10033962 [exp] 370 / 8e-125 AT5G18550 456 / 7e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10002880 [exp] 357 / 3e-119 AT5G18550 457 / 3e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10020196 [exp] 317 / 2e-104 AT3G02830 510 / 0.0 zinc finger protein 1 (.1) Lus10026996 [exp] 313 / 6e-103 AT3G02830 508 / 3e-180 zinc finger protein 1 (.1) Lus10035330 [exp] 223 / 9e-68 AT1G04990 335 / 1e-111 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10015156 [exp] 208 / 2e-62 AT1G04990 299 / 5e-98 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G022500 [exp] 395 / 5e-135 AT5G18550 422 / 7e-145 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.008G215700 [exp] 385 / 2e-130 AT5G18550 397 / 8e-135 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.013G086800 [exp] 320 / 2e-105 AT3G02830 542 / 0.0 zinc finger protein 1 (.1) Potri.019G053200 [exp] 313 / 9e-103 AT3G02830 527 / 0.0 zinc finger protein 1 (.1) Potri.014G159500 [exp] 242 / 3e-75 AT1G04990 312 / 6e-103 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.002G223700 [exp] 241 / 6e-75 AT1G04990 340 / 8e-114 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.008G080300 [exp] 188 / 3e-54 AT3G12680 544 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) Potri.012G092500 [exp] 181 / 5e-52 AT5G63260 362 / 2e-121 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.015G089100 [exp] 180 / 2e-51 AT5G63260 373 / 9e-126 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.010G176300 [exp] 176 / 1e-49 AT3G12680 578 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10035248 pacid=23162458 polypeptide=Lus10035248 locus=Lus10035248.g ID=Lus10035248.BGIv1.0 annot-version=v1.0 ATGGAGTCGTACGGTCACAACAAGGCAATCGATGCTCCGCAACTCACTGAATGGAGTCCCGCCGGGGCGGAGACTGGCCTTGAAGAATCGATGAGGGGAT TACGGATGTCAAGCAACGAAGCGTATCCTGAACGTCCAGGGTTCCCCAATTGTGTTTACTATATGCGGACTGGGGTCTGTGGGTATGGTGGTCGGTGCCG CTACAATCATCCTCTCGATCGAGCTGCGGCTGAGGCAACTGTAAGAGCCACTGGGTTGTTTCCAGAACGGAATGGGGATCCCCCATGTCAGTTTTACTTG AAGACTGGAACCTGTAAATTTGGTGCATCTTGCAAATTCAACCATCCCAAGAACAGAGGTGGATCCTTGATCAATGTTACTCTAAATGTGCAGGGATACC CTTTAAGACCGGATGAGGATGAATGCTGCTACTATTTGCAGACGGGGCGCTGCAAGTTCGGTATAACTTGTAAATTCCATCATCCTCAGCGAGCTGACAC AACATCTGCACCTCAGTTTTATCATCCGGTGCAATCTCCTTCTGCAGCAGCCACCAATCTAAGAGTGAGGCTCCCTGGTACATTTATGCAGGGAACGTAC GGTCCCGTATTGTTTTCTCCTGGGGTGGTACCTATTCCGGGTTGGAGCCCTTACTCGGCATCTGTAAGCCCTGTCCAGTCTCCTGGTGCACAAACTGCTG TTGGACCAGCTTCTCAATATGGAGTGACGCAACTGGCTGCTACAACATCAGGAGCGCCTCATAGACCTTATCCTTCTCTACTGTCTTTTGGTGCTCTCAC AAGCAGTACCCAGAAGGAGCATAATACATTTCCAGAGAGACCAGGGGAACCAGAATGCGAGTACTACATAAAAACTGGGGATTGTAAATATGGTTTGTCT TGCAGATATCATCATCCTCGTGATAGAGTTGCACCCATCACAGATAGTGTCCTCAATCCACTTGGCCTGCCATTGCGTCTGGGGATGCAGCCATGCAGTT TCTACTTGCAAACTGGGCACTGCAAATTCGGCTACAAGTGCAAGTTCGATCATCCCGTAGGAGGAGGTGTCATGCGATACAGTCCGTCAGCTTCATCTCT GGTTGATATGCCTATTGCACCTTACCTAGTAGGGTCCTTACTGGCTACTCTTTCCCCTCCTTCCACTTCCTATGAACTCAGACCCCAACTCTTGTCTGGA CTACCTCCCAGGAAGATAACATATCTGAGCAAGAGCCCTCCTGGTCCTGGACACACATCCAACAGTCCAGTTGGATTGATTCTCTCCCAGACTGGACCCC GCTCGCCTTACTGA
AA sequence Show only first row Show all	>Lus10035248 pacid=23162458 polypeptide=Lus10035248 locus=Lus10035248.g ID=Lus10035248.BGIv1.0 annot-version=v1.0 MESYGHNKAIDAPQLTEWSPAGAETGLEESMRGLRMSSNEAYPERPGFPNCVYYMRTGVCGYGGRCRYNHPLDRAAAEATVRATGLFPERNGDPPCQFYL KTGTCKFGASCKFNHPKNRGGSLINVTLNVQGYPLRPDEDECCYYLQTGRCKFGITCKFHHPQRADTTSAPQFYHPVQSPSAAATNLRVRLPGTFMQGTY GPVLFSPGVVPIPGWSPYSASVSPVQSPGAQTAVGPASQYGVTQLAATTSGAPHRPYPSLLSFGALTSSTQKEHNTFPERPGEPECEYYIKTGDCKYGLS CRYHHPRDRVAPITDSVLNPLGLPLRLGMQPCSFYLQTGHCKFGYKCKFDHPVGGGVMRYSPSASSLVDMPIAPYLVGSLLATLSPPSTSYELRPQLLSG LPPRKITYLSKSPPGPGHTSNSPVGLILSQTGPRSPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035248 [exp]	0	1
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10031505 [exp]	1.7	0.8377
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Lus10022150 [exp]	6.5	0.8108
AT1G62050			Ankyrin repeat family protein ...		Lus10003524 [exp]	11.1	0.8348
AT2G40815			Calcium-dependent lipid-bindin...		Lus10030501 [exp]	13.0	0.8055
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Lus10030349 [exp]	14.4	0.7927
AT3G13980			unknown protein		Lus10008457 [exp]	14.7	0.7659
AT3G27390			unknown protein		Lus10022317 [exp]	14.8	0.8043
AT3G15040			Protein of unknown function, D...		Lus10016988 [exp]	16.1	0.8102
AT1G21090			Cupredoxin superfamily protein...		Lus10028576 [exp]	16.4	0.8150
AT3G15040			Protein of unknown function, D...		Lus10021309 [exp]	18.6	0.8113

Compare expression of checked genes

Lus10035248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.