Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26410 244 / 5e-81 Uncharacterised conserved protein UCP022280 (.1) AT2G45060 123 / 1e-33 Uncharacterised conserved protein UCP022280 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034621 [exp] 514 / 0 AT4G26410 241 / 1e-79 Uncharacterised conserved protein UCP022280 (.1) Lus10013474 [exp] 320 / 5e-111 AT4G26410 250 / 1e-83 Uncharacterised conserved protein UCP022280 (.1) Lus10007935 [exp] 287 / 2e-98 AT4G26410 207 / 4e-67 Uncharacterised conserved protein UCP022280 (.1) Lus10042878 [exp] 127 / 2e-35 AT2G45060 286 / 3e-97 Uncharacterised conserved protein UCP022280 (.1) Lus10028177 [exp] 118 / 1e-31 AT2G45060 268 / 4e-90 Uncharacterised conserved protein UCP022280 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G001300 [exp] 275 / 2e-93 AT4G26410 266 / 4e-90 Uncharacterised conserved protein UCP022280 (.1) Potri.002G142900 [exp] 129 / 7e-36 AT2G45060 287 / 2e-97 Uncharacterised conserved protein UCP022280 (.1) Potri.014G058700 [exp] 112 / 9e-30 AT2G45060 293 / 4e-100 Uncharacterised conserved protein UCP022280 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035249 pacid=23162398 polypeptide=Lus10035249 locus=Lus10035249.g ID=Lus10035249.BGIv1.0 annot-version=v1.0 ATGGGGGATGCCACTGTCGAAAGCCAAAACAGCAATGCATTTTCAATTGCTGGAGGGAAAGTAGAAGAAGGGGCCCAAGCAGGTAAAGATGTTATGAACA ATGCAACAGCTGCAGGAGCAAGCGGCAACTGGGTGTATGATTTGCAGAAGTCGGTAGTAGAATCAAAGGATTCGGCAATACGCTCTGCCAATGGCTTTCG GCGATGCTCCTCATACCATTTGCAGAACCTGCAGGATCGTTACGTGCCTCGTGCCATCTCTAATTTGAAGACTTATGAAGATGCTCTCTTCACCAAACTA AAAGATGGGCTAGCCACTACCAAAGAACACCCAGTTGCTTCTCTTGAAGTTGTTCTCGCCTCTTCCCTTATTCTCATGCGAGGTCCACGGAGATTTCTAT TGCGGCAGACATGGGGTCGATTTGAGAGTGAGGAGTCACGATTCCATAGAGCTGAGAAGAATGTTAAAGACTTCTGTGTGTCTGTTGATCAGATGAAGAA GGACAGCCAAAAGTTGCTTGAAAGGGCTGCTCTAGCTCATAAAGACATAAAACATGGCCATGCCGAGCTCATGGGTGCAGGAAATCAAATAAGAAGCTTA GCCAAATCAGTTTACAAGGTTGAACGACAGGCTTCTGATTTGGTGGATGGTCTGCGAGAAATCCCAGGAAGAGAAGCCTTGAAACTTCGACTTGAGGTGG CTTCCATGGCATCCAATTTGAAAAAGCAGAAAACAGGCCTAGATAAGCAGATTCTGAAGATTTCTGAACTAGGAGTCCCAGTTTGA
AA sequence Show only first row Show all	>Lus10035249 pacid=23162398 polypeptide=Lus10035249 locus=Lus10035249.g ID=Lus10035249.BGIv1.0 annot-version=v1.0 MGDATVESQNSNAFSIAGGKVEEGAQAGKDVMNNATAAGASGNWVYDLQKSVVESKDSAIRSANGFRRCSSYHLQNLQDRYVPRAISNLKTYEDALFTKL KDGLATTKEHPVASLEVVLASSLILMRGPRRFLLRQTWGRFESEESRFHRAEKNVKDFCVSVDQMKKDSQKLLERAALAHKDIKHGHAELMGAGNQIRSL AKSVYKVERQASDLVDGLREIPGREALKLRLEVASMASNLKKQKTGLDKQILKISELGVPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26410			Uncharacterised conserved prot...		Lus10035249 [exp]	0	1
AT4G30580		LPAT1, ATS2, EM...	lysophosphatidic acid acyltran...		Lus10022158 [exp]	2.8	0.7971
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10003827 [exp]	6.5	0.7841
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Lus10023776 [exp]	6.9	0.7945
AT2G44590		ADL1D	DYNAMIN-like 1D (.1.2.3)		Lus10030928 [exp]	12.2	0.7964
AT2G14045			unknown protein		Lus10022007 [exp]	13.8	0.7575
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10005520 [exp]	14.4	0.7744
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10041875 [exp]	18.7	0.7886
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Lus10029603 [exp]	19.0	0.6848
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10043133 [exp]	22.1	0.7708
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Lus10034739 [exp]	40.8	0.7284

Compare expression of checked genes

Lus10035249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.