Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38880 256 / 2e-78 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005085 [exp] 372 / 5e-123 AT5G38880 1081 / 0.0 unknown protein Lus10034366 [exp] 370 / 6e-122 AT5G38880 1121 / 0.0 unknown protein Lus10034622 [exp] 240 / 2e-74 AT5G38880 301 / 4e-93 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G100300 [exp] 302 / 8e-96 AT5G38880 1120 / 0.0 unknown protein Potri.004G114600 [exp] 292 / 5e-92 AT5G38880 1110 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035251 pacid=23162396 polypeptide=Lus10035251 locus=Lus10035251.g ID=Lus10035251.BGIv1.0 annot-version=v1.0 ATGTTGGAAGTCTCTAGGGAAGAAGCCGAGAGAAAGAGAATGATCGTCGAACGTTCTAAAAACAGGCATAAGCAGGTGATATTGGAATCCTATGATCAGC AGTGTGATGAAGCAGCAAAAATATTTGCTGGATATCACAAGCGTCTTTGCTACTATGTTAATCAAGCCAGAGATGCTCAAAAGCTGAGTGCTGACTCTTT GATGGAAGTGGTTAGCACCACTAGTGCAAACAGTGAGAAGGAATCGGTTTATTCAACTGTCAAGGGTGCTAGATCTTCTGATGATGTCATTCATATTGAA ACTGTTCAGGAGAGAAATATTAGAAAGGCATGTGAATATCTTGCAGCCCATATGATAGAGAGAATACGTGTATCTTTTCCTTCATACGAAGGAAGTGGTA TTCATTCAAGTCCTCAACTAGAAGCTGCAAAACTGGGTATCGATTTGGATGGGGAAGTACCTGATGAAGTTAAAACTGTCATTTTTAGAGAAATTGAGAA AATTGATGTCAGAGCTGATGCAGAAACTTTAAGATACAAGTTTGAGAACAACAGAGTACTGGAGGCTTCTTCTCCTGATGTTAGCTCTCCATTACATTAT CAACTGCCTGGTTTGGAGGGTTCAGATTCTGGTTTAGCATCGGTGTTGGAGTCCTTGGAGTTCTGTTTAAATCTACGTGGTTCAGAGGCTAGTGTTCTGG AGGATTTGGCAAATGCGATCAACATGGTTCACATACGGCAGAATCTTGTTGAAAGTGGTCATGCACTTTTGAACCATGCATATTATGCTCAATCAGAATA CGAAAGTGAAATTAAATCAGCACTCTTGCTACCTTCGTTAGCTGTTGTAGATACTTATTCGTGCTTCAAGATTGTTAAGGAGAAGTGGCTTCCTGAGCTC AAAGCTGCAAGTTTGACTTCGGAAGAATGCCTGAATGGTTGCAAATATGTTAGGAGCTTGCTTAATGAATGCTGGGATCAACCAGCTTCAACAGTGGTTG ATTGGGTTTATGTTGATGGACAAGACGTTGCTACTTGGATTAATCACGTCAAGCAACTGCTTACATTGTCGTGA
AA sequence Show only first row Show all	>Lus10035251 pacid=23162396 polypeptide=Lus10035251 locus=Lus10035251.g ID=Lus10035251.BGIv1.0 annot-version=v1.0 MLEVSREEAERKRMIVERSKNRHKQVILESYDQQCDEAAKIFAGYHKRLCYYVNQARDAQKLSADSLMEVVSTTSANSEKESVYSTVKGARSSDDVIHIE TVQERNIRKACEYLAAHMIERIRVSFPSYEGSGIHSSPQLEAAKLGIDLDGEVPDEVKTVIFREIEKIDVRADAETLRYKFENNRVLEASSPDVSSPLHY QLPGLEGSDSGLASVLESLEFCLNLRGSEASVLEDLANAINMVHIRQNLVESGHALLNHAYYAQSEYESEIKSALLLPSLAVVDTYSCFKIVKEKWLPEL KAASLTSEECLNGCKYVRSLLNECWDQPASTVVDWVYVDGQDVATWINHVKQLLTLS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38880			unknown protein		Lus10035251 [exp]	0	1
AT5G38880			unknown protein		Lus10035250 [exp]	1.4	0.7494
AT5G51540			Zincin-like metalloproteases f...		Lus10031136 [exp]	15.4	0.7503
AT1G22460			O-fucosyltransferase family pr...		Lus10020943 [exp]	22.0	0.6659
AT5G04895			DEA(D/H)-box RNA helicase fami...		Lus10034126 [exp]	24.7	0.7236
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10040349 [exp]	28.3	0.6741
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10011198 [exp]	36.8	0.6094
AT1G55690			Sec14p-like phosphatidylinosit...		Lus10008360 [exp]	37.1	0.6862
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10024645 [exp]	49.6	0.6653
AT2G26610			Transducin family protein / WD...		Lus10006655 [exp]	51.0	0.7058
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Lus10025172 [exp]	61.3	0.6729

Compare expression of checked genes

Lus10035251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.