Plant FIBer expression Database

Lus10035252 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005086
[exp]
93 / 5e-22 AT5G15780 133 / 5e-35 Pollen Ole e 1 allergen and extensin family protein (.1)
Lus10034365
[exp]
89 / 2e-20 AT5G15780 129 / 7e-34 Pollen Ole e 1 allergen and extensin family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G114300
[exp]
53 / 6e-08 AT5G15780 178 / 5e-52 Pollen Ole e 1 allergen and extensin family protein (.1)
Potri.017G100600
[exp]
48 / 3e-06 AT5G15780 173 / 1e-49 Pollen Ole e 1 allergen and extensin family protein (.1)
PFAM info
Representative CDS sequence
>Lus10035252 pacid=23162432 polypeptide=Lus10035252 locus=Lus10035252.g ID=Lus10035252.BGIv1.0 annot-version=v1.0
ATGGCTTGCTTCTCCATATTCACAGTCCTCTGCCTTCTAAGCTTCACCTTCACGGAAGCCAAGCACGAAGCTACTGCTTCGAAGCTTCCAGTTCCATCAT
CTGATTCTGCTATTGTTGTTGGCACCGTCTACTGTGACACCTGCTTCCAGGATGTAGAGACCCGCTTCATTTCCGGTTACTTACTTTGCCAGAGCATCTG
TTGCCATAGAATGCAGACGCGGGAGGTAGCAGAACTTCCTACCAAACCAGAAATGAACCAGAATCATTTTATGCCTCTGCTACCAAAGCTTCCACCTTTA
CCTCATCTCCCAAGGATGCCCTTTTTTCCTCCTTGGTCTGGAAAAACCAAGCAGGCTGCTTCTGGGAAACCCACTTTCAGGAAAGGACTAGGAGACGGTA
ACAATGACAATGATGATGATGATCAACTGTCTAATCAGAAATCAAGACAACAACGTCATGAAACTACTCAGCCTCAGGGTTTCCTCCCAATGCCACCAAT
CCTGCCGCCAAACCCTTTCCAGCCACCGCCATCAGTGTTGCCTCCGATTCTTCCAACGCCTCCTCGGCCTTCATTTTTGCCTCCAATTCTTCCAACGCCT
CCTCGGCCTTCATTTTTGCCTCCAATTCTTCCAACACGTCCGCCTTCATTTTTGCCTCCAATTCTTCCAACACCTCGTAGTGCTTCTCATAAATCCGGGC
CCTGA
AA sequence
>Lus10035252 pacid=23162432 polypeptide=Lus10035252 locus=Lus10035252.g ID=Lus10035252.BGIv1.0 annot-version=v1.0
MACFSIFTVLCLLSFTFTEAKHEATASKLPVPSSDSAIVVGTVYCDTCFQDVETRFISGYLLCQSICCHRMQTREVAELPTKPEMNQNHFMPLLPKLPPL
PHLPRMPFFPPWSGKTKQAASGKPTFRKGLGDGNNDNDDDDQLSNQKSRQQRHETTQPQGFLPMPPILPPNPFQPPPSVLPPILPTPPRPSFLPPILPTP
PRPSFLPPILPTRPPSFLPPILPTPRSASHKSGP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10035252
[exp]
0 1
AT1G55460 C2H2ZnF DNA/RNA-binding protein Kin17,... Lus10012271
[exp]
1.0 0.7369
AT5G44440 FAD-binding Berberine family p... Lus10003646
[exp]
14.3 0.6744
AT3G53900 UPP, PYRR PYRIMIDINE R, uracil phosphori... Lus10012654
[exp]
16.4 0.6957
AT5G39050 PMAT1 phenolic glucoside malonyltran... Lus10035802
[exp]
20.1 0.6628
AT4G04980 unknown protein Lus10018473
[exp]
22.6 0.6549
Lus10007510
[exp]
23.0 0.6620
AT3G13850 AS2 LBD22 LOB domain-containing protein ... Lus10003789
[exp]
34.1 0.5980
AT1G19780 ATCNGC8 cyclic nucleotide gated channe... Lus10024073
[exp]
34.5 0.6110
AT5G66650 Protein of unknown function (D... Lus10005312
[exp]
44.0 0.5874
AT5G55390 EDM2 ENHANCED DOWNY MILDEW 2 (.1.2) Lus10038454
[exp]
48.2 0.5765

Lus10035252 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.