Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18830 656 / 0 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G16120 645 / 0 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G16130 642 / 0 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT4G36670 547 / 0 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G18480 506 / 2e-176 AtPLT3 Major facilitator superfamily protein (.1) AT2G20780 442 / 6e-151 AtPLT4 Major facilitator superfamily protein (.1) AT5G59250 213 / 3e-62 Major facilitator superfamily protein (.1) AT2G43330 211 / 7e-62 ATINT1 inositol transporter 1 (.1) AT5G16150 211 / 2e-61 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT5G17010 208 / 9e-61 Major facilitator superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034623 [exp] 1023 / 0 AT3G18830 652 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10042339 [exp] 731 / 0 AT3G18830 735 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10040482 [exp] 726 / 0 AT3G18830 722 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011288 [exp] 724 / 0 AT3G18830 721 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10006971 [exp] 723 / 0 AT3G18830 631 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011287 [exp] 691 / 0 AT3G18830 692 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10041731 [exp] 581 / 0 AT4G36670 664 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Lus10014323 [exp] 534 / 0 AT5G66740 650 / 0.0 Protein of unknown function (DUF620) (.1) Lus10026032 [exp] 531 / 0 AT4G36670 645 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G113600 [exp] 723 / 0 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G152300 [exp] 714 / 0 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G151725 [exp] 702 / 0 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G027900 [exp] 559 / 0 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.006G158700 [exp] 478 / 8e-166 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.013G135200 [exp] 463 / 3e-159 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 422 / 3e-143 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.004G097800 [exp] 220 / 8e-65 AT5G16150 656 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.017G032200 [exp] 210 / 2e-61 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.007G126800 [exp] 209 / 3e-61 AT2G43330 710 / 0.0 inositol transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10035255 pacid=23162355 polypeptide=Lus10035255 locus=Lus10035255.g ID=Lus10035255.BGIv1.0 annot-version=v1.0 ATGGCTGACGTCATGCCGCCGACGAAGGGAAAAACCCTGGCGGATTTCGACCCTCCGATGAAACCAAAGAGGAACAAATTCGCTTTCGTCTGCGCTACTG TCGCTTCCATGACCTCCGTCTTGCTTGGTTATGACATTGGAGTGATGAGTGGGGCCATCATCTACATCAAGAAGCAGTTCAGTATCTCCGACGTCAAAAT TGAACTCCTCGTTGGACTCCTCAACATCTACTCCCTCTTCGGATCTTTCATTGCCGGCAGAGTCTCCGATAGAATTGGCCGCCGCAGGACTATCGTCGTC GCCGCCGTTATTTTCTTTGTCGGCTCCCTCCTCATGGGTTTTGCCACCAACTATGCCTTCCTTATGGTCGGCCGTTTTGTGGCCGGCATCGGCGTTGGTT TCGGATGCATGATCGCTCCCGTCTATACTGCCGAGCTTGCTCCCGCCGCCTCCCGCGGTTTCCTGACTTCCTTCCCCGAGGTTTTCATTAACATAGGGAT TCTACTGGGCTTCGTTTCGAACTACGCCTTCTCCAAACTTCCACAGAATTTAGGCTGGCGATTCATGCTCGGAATCGGCGCCGTCCCGTCGGTCTTCCTG GCCGTGAGCGTCCTCTTCATGCCTGAATCTCCAAGGTGGCTCGTACTCCAAGGCCGACTGAAGGACGCTAAGAGTGTGCTCCTCAAAACCTGCACCAGTC CAGAGGAAGCCCAGCTGAGGCTCGACGACATCAAGGAGGCTGCGGGAATCCCAGAACACGTGAACGATGATGTTGTCCAAGTCGACAAGAAATCCCACGG AGAAGGCGTATGGAAAGAACTCATCCTCCACCCCACTCGTCCTGTGCGCCACATTCTAATGTGCGCCCTTGGGATCCACTTTTTCCAACAGGGTGCGGGC CTGGACGCTGTCGTTTTGTACAGCCCCAGAATTTTCGAGAAGGCTGGGCTGGCCACCCACAACGAGCAGCTTCTGGCCACCGTCGCCGTCGGTGTCGTAA AAACCTTATTCATCCTGGTCGCGACTTTCCTCCTCGATCGAGTTGGGCGACGGCCGCTACTGCTCGGATCCTTTGCCGGGATAATCGCCTCTTTGGCCAC CCTCGGGATGAGCCTGACGGTCATAGGCCAAGACCCGACCAAGAAGATAAAATGGGCGGTGGGGTTGTGCATGACATCGGTACTTTCGGCGGTGGCGTTT TTCTCGATCGGCGCAGGGCCGGTGACTGGGGTTTACAGTACGGAGATTTTCCCACTCCGGCTGAGGGCGCAAGGGTTGAGCCTTGGAATCGCGACAAACA GAGTGGTGAGTGGCGTGATCACAATGACGTTCTTGACACTTTACAAGGCGATCACGATCGGAGGGGCGTTCTTCCTATTTGCCGGGATCTCCACCGTAGG ATTTTTCTTCTTCTACCTATTCTACCCGGAGACTCAAGGGAAGACACTAGAAGAAATCGATGGGGTTTTCGGGAACTTCATTCATTGGAGGTCGGCGAAT TTGAACAAGAGTGGTAATAAGGCGGAGAAGGAAGTCAAGCTGGCGGAGATGAATTAA
AA sequence Show only first row Show all	>Lus10035255 pacid=23162355 polypeptide=Lus10035255 locus=Lus10035255.g ID=Lus10035255.BGIv1.0 annot-version=v1.0 MADVMPPTKGKTLADFDPPMKPKRNKFAFVCATVASMTSVLLGYDIGVMSGAIIYIKKQFSISDVKIELLVGLLNIYSLFGSFIAGRVSDRIGRRRTIVV AAVIFFVGSLLMGFATNYAFLMVGRFVAGIGVGFGCMIAPVYTAELAPAASRGFLTSFPEVFINIGILLGFVSNYAFSKLPQNLGWRFMLGIGAVPSVFL AVSVLFMPESPRWLVLQGRLKDAKSVLLKTCTSPEEAQLRLDDIKEAAGIPEHVNDDVVQVDKKSHGEGVWKELILHPTRPVRHILMCALGIHFFQQGAG LDAVVLYSPRIFEKAGLATHNEQLLATVAVGVVKTLFILVATFLLDRVGRRPLLLGSFAGIIASLATLGMSLTVIGQDPTKKIKWAVGLCMTSVLSAVAF FSIGAGPVTGVYSTEIFPLRLRAQGLSLGIATNRVVSGVITMTFLTLYKAITIGGAFFLFAGISTVGFFFFYLFYPETQGKTLEEIDGVFGNFIHWRSAN LNKSGNKAEKEVKLAEMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10035255 [exp]	0	1
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10020720 [exp]	3.5	0.9548
AT5G24600			Protein of unknown function, D...		Lus10013947 [exp]	3.6	0.9586
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Lus10043113 [exp]	4.0	0.9552
AT1G28290		AGP31	arabinogalactan protein 31 (.1...		Lus10025526 [exp]	8.7	0.9458
AT4G01630		ATEXP17, ATHEXP...	EXPANSIN 17, expansin A17 (.1)		Lus10009253 [exp]	9.5	0.9257
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10020725 [exp]	10.7	0.9285
AT5G04590		SIR	sulfite reductase (.1)		Lus10030131 [exp]	12.3	0.9313
AT5G01230			S-adenosyl-L-methionine-depend...		Lus10017186 [exp]	16.1	0.9274
AT3G52880		ATMDAR1	monodehydroascorbate reductase...		Lus10035593 [exp]	16.1	0.9469
AT1G11925			Stigma-specific Stig1 family p...		Lus10012679 [exp]	18.5	0.9222

Compare expression of checked genes

Lus10035255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.