Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68190 204 / 2e-62 CO B-box zinc finger family protein (.1) AT5G48250 104 / 5e-25 CO COL10 B-box type zinc finger protein with CCT domain (.1) AT1G28050 105 / 6e-25 CO COL15 B-box type zinc finger protein with CCT domain (.1) AT2G33500 104 / 8e-25 CO COL14 B-box type zinc finger protein with CCT domain (.1.2) AT3G07650 103 / 1e-24 CO COL9 CONSTANS-like 9 (.1.2.3.4) AT4G15250 101 / 4e-24 CO COL11 B-box type zinc finger protein with CCT domain (.1) AT3G21880 92 / 1e-20 CO COL12 B-box type zinc finger protein with CCT domain (.1) AT2G47890 88 / 4e-20 CO COL13 B-box type zinc finger protein with CCT domain (.1.2) AT5G24930 81 / 9e-17 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT2G24790 73 / 2e-14 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034625 [exp] 593 / 0 AT1G68190 182 / 3e-52 B-box zinc finger family protein (.1) Lus10031584 [exp] 108 / 5e-26 AT3G21880 256 / 2e-81 B-box type zinc finger protein with CCT domain (.1) Lus10015098 [exp] 103 / 1e-24 AT3G21880 260 / 4e-84 B-box type zinc finger protein with CCT domain (.1) Lus10002578 [exp] 101 / 2e-23 AT1G28050 299 / 3e-97 B-box type zinc finger protein with CCT domain (.1) Lus10001806 [exp] 100 / 5e-23 AT1G28050 298 / 1e-96 B-box type zinc finger protein with CCT domain (.1) Lus10041096 [exp] 92 / 8e-21 AT5G48250 374 / 2e-129 B-box type zinc finger protein with CCT domain (.1) Lus10040900 [exp] 86 / 2e-18 AT2G47890 289 / 1e-95 B-box type zinc finger protein with CCT domain (.1.2) Lus10039695 [exp] 78 / 1e-15 AT4G15250 207 / 4e-63 B-box type zinc finger protein with CCT domain (.1) Lus10026909 [exp] 77 / 3e-15 AT5G24930 404 / 3e-140 CONSTANS-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G125200 [exp] 308 / 2e-101 AT1G68190 144 / 8e-39 B-box zinc finger family protein (.1) Potri.014G170600 [exp] 105 / 3e-25 AT3G07650 328 / 3e-110 CONSTANS-like 9 (.1.2.3.4) Potri.001G061800 [exp] 99 / 1e-22 AT2G33500 213 / 6e-64 B-box type zinc finger protein with CCT domain (.1.2) Potri.003G166000 [exp] 98 / 4e-22 AT1G28050 204 / 2e-59 B-box type zinc finger protein with CCT domain (.1) Potri.002G214500 [exp] 92 / 2e-20 AT3G07650 355 / 9e-121 CONSTANS-like 9 (.1.2.3.4) Potri.017G039301 [exp] 92 / 2e-20 AT3G21880 288 / 2e-94 B-box type zinc finger protein with CCT domain (.1) Potri.001G323500 [exp] 91 / 5e-20 AT2G33500 213 / 2e-64 B-box type zinc finger protein with CCT domain (.1.2) Potri.014G134601 [exp] 87 / 4e-19 AT2G47890 174 / 4e-53 B-box type zinc finger protein with CCT domain (.1.2) Potri.007G121200 [exp] 87 / 1e-18 AT3G21880 291 / 1e-95 B-box type zinc finger protein with CCT domain (.1) Potri.002G208100 [exp] 82 / 3e-17 AT2G47890 276 / 4e-91 B-box type zinc finger protein with CCT domain (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035257 pacid=23162420 polypeptide=Lus10035257 locus=Lus10035257.g ID=Lus10035257.BGIv1.0 annot-version=v1.0 ATGGATAAGTTTTGTGAATTCTGTAGACAACTTAGAGCAGTGGCCTATTGCAATTCTGATCTAGCATATCTTTGCCTTTCCTGTGATACCAAGGTCCATT CAGCTAATGCACTTTCGGGCCGCCACCTACGCTCTCTCCTGTGTGACTCGTGCAGGCTGCAACCAACTTCTGTACAGTGCTTGAATCACAGGGTGTTTCT GTGTCATGACTGTGATCGCAACATTCACGAAATGTGCTCTCCGGGTCAGAAAAGAGAAGTTGGCAGCTACACTGGATCCCCATCTGCAAAGGATTTTGCT ATCCTGTGGGGTTTGAGATTAGATGAGCATCACAAAAGATCTGCTGATACTCGGTTGTGTTCCACTTCTGCTGGACCTGTCGCCACCAGTTTTGGCTTCT CGGGGAATTCACCACGACGAACTAGAGGAGTTTCCAGAGTATCTAAGAAAAAGAGTTGTACAGCTCTTAAAAATGGTGCAGAATCTAATGTCGTTTCAAG CAGTTACCTAACCAAGGTATCAGCTAAAGGTGCAATGAAGCAAGAGACAAGCTTCATACTGCAACAGATAAAGGATTTGAGAAATCTTCAGCTTGCAGAA GTTGATGCTAATGGTTCAATGACTCGGTCTTCTCCCCGATGGGACTCCATGAAGAAGTTCAAAAACAGCTGTGGTAATTTAGAAGAGCATCAAGATTTTG GTTCAGGGATTCAATCAAGCACCACCGCCGTTGCACCTTCAGATCTGAAAGTTGACCTGCAGGTTTCACCATTTTCTCTATCTGAGAGTTCACCTCTGAT GGCATCAACTGCTGCAAATGGTCTTCTGGGAGAATCCTTTTGGCATTGCAAAAGTCCATTTCAGAATAGTCAGCTTTGGTCTCAAACCATGCAAGACCTT GGCATCTGTGAAGATGTTTGCTACGATGATTTGAACATACCTGATGTCGACATAAGCTTTCGTAACTTTGAAGAACTATTTGGAGGTGATCAAGAACCGA TAATTAGAGAAATGATGGACGAAAAAGATGCTTCATGCTCCTCACTGGAGAAGGAGATGTTCCTTGATAAATCAATGGCAAGTAATTGA
AA sequence Show only first row Show all	>Lus10035257 pacid=23162420 polypeptide=Lus10035257 locus=Lus10035257.g ID=Lus10035257.BGIv1.0 annot-version=v1.0 MDKFCEFCRQLRAVAYCNSDLAYLCLSCDTKVHSANALSGRHLRSLLCDSCRLQPTSVQCLNHRVFLCHDCDRNIHEMCSPGQKREVGSYTGSPSAKDFA ILWGLRLDEHHKRSADTRLCSTSAGPVATSFGFSGNSPRRTRGVSRVSKKKSCTALKNGAESNVVSSSYLTKVSAKGAMKQETSFILQQIKDLRNLQLAE VDANGSMTRSSPRWDSMKKFKNSCGNLEEHQDFGSGIQSSTTAVAPSDLKVDLQVSPFSLSESSPLMASTAANGLLGESFWHCKSPFQNSQLWSQTMQDL GICEDVCYDDLNIPDVDISFRNFEELFGGDQEPIIREMMDEKDASCSSLEKEMFLDKSMASN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68190	CO		B-box zinc finger family prote...		Lus10035257 [exp]	0	1
AT1G68190	CO		B-box zinc finger family prote...		Lus10034625 [exp]	1.0	0.8586
					Lus10009807 [exp]	1.4	0.7813
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Lus10007459 [exp]	1.7	0.7734
AT5G46910			Transcription factor jumonji (...		Lus10030988 [exp]	4.5	0.7436
AT1G77260			S-adenosyl-L-methionine-depend...		Lus10042762 [exp]	4.9	0.7392
					Lus10014061 [exp]	13.0	0.7064
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10000566 [exp]	14.3	0.7542
AT4G19985			Acyl-CoA N-acyltransferases (N...		Lus10003688 [exp]	25.0	0.6736
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10000806 [exp]	25.5	0.6567
					Lus10042563 [exp]	29.0	0.7311

Compare expression of checked genes

Lus10035257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.