Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68185 143 / 4e-42 Ubiquitin-like superfamily protein (.1) AT5G55856 51 / 2e-08 Ubiquitin-like superfamily protein (.1) AT4G26840 49 / 9e-08 ATSUMO1, SUMO1, SUM1 ARABIDOPSIS THALIANA SMALL UBIQUITIN-LIKE MODIFIER 1, small ubiquitin-like modifier 1 (.1) AT5G55170 49 / 1e-07 ATSUMO3, SUMO3, SUM3 small ubiquitin-like modifier 3 (.1) AT5G55160 45 / 2e-06 ATSUMO2, SUMO2, SUM2 small ubiquitin-like modifier 2 (.1.2) AT2G32765 40 / 0.0002 ATSUMO5, SUM5 SUMO 5, small ubiquitinrelated modifier 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000234 [exp] 398 / 3e-142 AT1G68185 154 / 1e-46 Ubiquitin-like superfamily protein (.1) Lus10034627 [exp] 398 / 3e-142 AT1G68185 154 / 1e-46 Ubiquitin-like superfamily protein (.1) Lus10043185 [exp] 49 / 1e-07 AT5G55160 174 / 4e-58 small ubiquitin-like modifier 2 (.1.2) Lus10032560 [exp] 49 / 1e-07 AT5G55160 174 / 4e-58 small ubiquitin-like modifier 2 (.1.2) Lus10032561 [exp] 49 / 1e-07 AT5G55160 174 / 4e-58 small ubiquitin-like modifier 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G118900 [exp] 140 / 5e-41 AT1G68185 164 / 7e-51 Ubiquitin-like superfamily protein (.1) Potri.002G224700 [exp] 51 / 3e-08 AT4G26840 170 / 1e-56 ARABIDOPSIS THALIANA SMALL UBIQUITIN-LIKE MODIFIER 1, small ubiquitin-like modifier 1 (.1) Potri.002G224800 [exp] 49 / 1e-07 AT5G55160 172 / 3e-57 small ubiquitin-like modifier 2 (.1.2) Potri.014G158300 [exp] 49 / 1e-07 AT5G55160 171 / 5e-57 small ubiquitin-like modifier 2 (.1.2) Potri.014G190300 [exp] 47 / 1e-06 AT5G55160 168 / 7e-56 small ubiquitin-like modifier 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF11976 [flax] [poplar] Rad60-SLD Ubiquitin-2 like Rad60 SUMO-like
Representative CDS sequence Show only first row Show all	>Lus10035259 pacid=23162544 polypeptide=Lus10035259 locus=Lus10035259.g ID=Lus10035259.BGIv1.0 annot-version=v1.0 ATGATTCGATATCTTAGCCAATCCGGCTTAGGTTTTCGTTTTCCTTTCTCCTATTCTAAATCTACTGAATGCGAGAATGTGGCTCACTCTTTGCAGGCGG ATTTGAATGAAGAACTCGAGCCTTTGTTCGATTACCGGCGTGTTCAACCGACGAATTTCGTCTGCCTCGACGATGATGAATCACCGGTTTGTGCTGCCAA GAAACGGAAAAAGGATGTCAAACCAGTTATTGGCAATGCAGAAGACGATGAGGTGGAGGTCATAGAGGTCGTCAAGCGTACTGAAGAAGAGGAAGAGGAA GACTGGCTACCTCCTCCGCCTAAGGTTTCTGTCAATCCCCGGAAGCAGCATTGTGAAGATAAAACGGTTACAAAACTAAGGTTGAGAACAGAGGAGCTTC TGCAATCTCTTGCGAAATCAGCTAATCAAGTGTTTCTAGCCCCTGAAGATTTTAAAACAAAGATTCCACTAGAGGAATCTGATCCAAATGTTGCAGACCC TCTCAGGGAGACAGCTAAAACTGTAAATCCTGCTGCTGAAAGGGCTAAAATAGTAATATCTGTTCAAGGCCAAGATGGACTGAAGACATACCGTCTTTAC AAGGATGACAAATTTGAGGCATTCTTCAAGAAGTATGCAGAAAGGGCTAATCTCAAGGTTGAGGAGCTGGTGTTTACCTTCGACGGTGACAAAATTGGTC TGAAAGAAACACCTTCTAGCCTTGACATGGAAGACGAGGACATGATTGAGGTGCACTCTAAGAAACCCCTCAAATAA
AA sequence Show only first row Show all	>Lus10035259 pacid=23162544 polypeptide=Lus10035259 locus=Lus10035259.g ID=Lus10035259.BGIv1.0 annot-version=v1.0 MIRYLSQSGLGFRFPFSYSKSTECENVAHSLQADLNEELEPLFDYRRVQPTNFVCLDDDESPVCAAKKRKKDVKPVIGNAEDDEVEVIEVVKRTEEEEEE DWLPPPPKVSVNPRKQHCEDKTVTKLRLRTEELLQSLAKSANQVFLAPEDFKTKIPLEESDPNVADPLRETAKTVNPAAERAKIVISVQGQDGLKTYRLY KDDKFEAFFKKYAERANLKVEELVFTFDGDKIGLKETPSSLDMEDEDMIEVHSKKPLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68185			Ubiquitin-like superfamily pro...		Lus10035259 [exp]	0	1
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10037965 [exp]	2.0	0.7937
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10043153 [exp]	8.8	0.7791
AT3G54710		ATCDT1B, CDT1B,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Lus10040505 [exp]	14.2	0.7417
AT5G17520		MEX1, RCP1	MALTOSE EXCESS 1, root cap 1 (...		Lus10020364 [exp]	25.3	0.6893
AT4G37250			Leucine-rich repeat protein ki...		Lus10011509 [exp]	26.7	0.5943
AT3G28670			oxidoreductase, zinc-binding d...		Lus10042926 [exp]	27.0	0.6694
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10042646 [exp]	33.0	0.7187
AT5G27230			Frigida-like protein (.1)		Lus10033828 [exp]	40.2	0.6984
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10001783 [exp]	44.5	0.6819
AT1G16590		REV7, ATREV7	DNA-binding HORMA family prote...		Lus10006836 [exp]	48.3	0.6251

Compare expression of checked genes

Lus10035259 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.