Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02600 397 / 2e-139 ATLPP3, LPP3 lipid phosphate phosphatase 3 (.1.2.3.4.5) AT2G01180 395 / 2e-138 ATLPP1, ATPAP1 LIPID PHOSPHATE PHOSPHATASE 1, phosphatidic acid phosphatase 1 (.1.2) AT1G15080 355 / 8e-123 ATLPP2, LPP2, ATPAP2 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1) AT3G18220 286 / 2e-95 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034630 [exp] 549 / 0 AT3G02600 418 / 4e-147 lipid phosphate phosphatase 3 (.1.2.3.4.5) Lus10007933 [exp] 464 / 3e-158 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10009155 [exp] 393 / 1e-135 AT3G02600 488 / 1e-172 lipid phosphate phosphatase 3 (.1.2.3.4.5) Lus10028489 [exp] 371 / 1e-128 AT3G02600 465 / 1e-166 lipid phosphate phosphatase 3 (.1.2.3.4.5) Lus10013470 [exp] 364 / 3e-127 AT3G02600 326 / 1e-112 lipid phosphate phosphatase 3 (.1.2.3.4.5) Lus10034629 [exp] 339 / 2e-116 AT1G15080 442 / 4e-158 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1) Lus10035261 [exp] 336 / 3e-115 AT1G15080 443 / 2e-158 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1) Lus10013469 [exp] 94 / 7e-21 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G119400 [exp] 414 / 1e-145 AT3G02600 407 / 9e-143 lipid phosphate phosphatase 3 (.1.2.3.4.5) Potri.008G124900 [exp] 400 / 5e-140 AT3G02600 420 / 3e-148 lipid phosphate phosphatase 3 (.1.2.3.4.5) Potri.004G095400 [exp] 390 / 2e-135 AT3G02600 465 / 1e-164 lipid phosphate phosphatase 3 (.1.2.3.4.5) Potri.017G119500 [exp] 388 / 3e-135 AT3G02600 460 / 1e-163 lipid phosphate phosphatase 3 (.1.2.3.4.5) Potri.010G119300 [exp] 363 / 6e-126 AT1G15080 452 / 1e-161 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [flax] [poplar] pap2 PF01569 [flax] [poplar] PAP2 PAP2 superfamily
Representative CDS sequence Show only first row Show all	>Lus10035262 pacid=23162563 polypeptide=Lus10035262 locus=Lus10035262.g ID=Lus10035262.BGIv1.0 annot-version=v1.0 ATGGGTCTGGGTTGGATCCGTGGCATCTTTCAGCGGCAGGCCGAGCAGGAAGAGCAGCAAGGAGGGGGTAGGAGGATGAGAGAAGTGGATCTGGGTGCTC ACACAATCAAAAGCCATGGAGGTAGAGTTGCCAGGAACCACATGTACGATTGGCTCGCATTGGTGTTGCTTGGTGTGGTGGAGATCATTTTGTTAACCAT CCATCCTTTCTATCGGTTCGTTGGCAAGGACATGATGGTTGATATCAGATACCCCTTGAAGGAAAACACCGTCCCCACTTGGTCCATCGCTCTATATGCA GTTCTGTTGCCAATTCTAGTCTTCATTTTTTTCTACTACCGGAGAAGATGTGTCTTTGATCTCCACCATGCCATTTTAGGCCTCTTTTTCACCGTAGCAA TCACTGCAGTCCTTACCGATGCCATAAAACTTGCGACTGGGAGGCCGAGGCCCGACTTCTTCTGGCGTTGCTTCCCTGATGGCAAGGATCTTTATGATCA ATTGGGAGATGTAATATGTCATGGCAAAGGCAAGGAGATAAGAGAAGGACATAAGAGCTTTCCCAGTGGCCATGCTTCCTGGTCGTTTGCTGGATTAGGG TTTCTTTCTCTGTATTTAAGTGGCAAGATCAAAGTGTTTGACAGGCAAGGTCACGTGGGGAAGCTATGCATTGTCATATTCCCTCTCCTTGCTGCAGCTC TTGTCGCGATATCCCGAGTTGACGACTATCGACATCATTGGCAGGACGTTTTTGCTGGATCTATATTAGGACTTGTGGTTGCAACCCTTTGCTACAGACA GTTCTTCCCAGCGCCTTACCACAGTGATGGGTGGGGGCCATATGCATATTTCCAGGCGCTGGAGGACTCACGGTCAGGTGATCGAGATGATGCTCATAAT CACAATAATAACTATAACAACAGTAATAACAACGTTGAAGCTATGGTAGAACGACACGAGCAAGTTCGTAGGCCGAATGCAGATCTTGAATTTACATCGC TAGATCTTGAATCTGGAGGAAGATAG
AA sequence Show only first row Show all	>Lus10035262 pacid=23162563 polypeptide=Lus10035262 locus=Lus10035262.g ID=Lus10035262.BGIv1.0 annot-version=v1.0 MGLGWIRGIFQRQAEQEEQQGGGRRMREVDLGAHTIKSHGGRVARNHMYDWLALVLLGVVEIILLTIHPFYRFVGKDMMVDIRYPLKENTVPTWSIALYA VLLPILVFIFFYYRRRCVFDLHHAILGLFFTVAITAVLTDAIKLATGRPRPDFFWRCFPDGKDLYDQLGDVICHGKGKEIREGHKSFPSGHASWSFAGLG FLSLYLSGKIKVFDRQGHVGKLCIVIFPLLAAALVAISRVDDYRHHWQDVFAGSILGLVVATLCYRQFFPAPYHSDGWGPYAYFQALEDSRSGDRDDAHN HNNNYNNSNNNVEAMVERHEQVRRPNADLEFTSLDLESGGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10035262 [exp]	0	1
AT1G30755			Protein of unknown function (D...		Lus10017260 [exp]	1.4	0.9027
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10034630 [exp]	3.0	0.8530
AT4G24160			alpha/beta-Hydrolases superfam...		Lus10024310 [exp]	3.5	0.8740
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10023838 [exp]	4.2	0.8650
AT4G36500			unknown protein		Lus10014291 [exp]	6.2	0.8843
AT5G47530			Auxin-responsive family protei...		Lus10006398 [exp]	7.7	0.8661
AT1G29690		CAD1	constitutively activated cell ...		Lus10029279 [exp]	11.2	0.7838
AT5G07100	WRKY	WRKY26	WRKY DNA-binding protein 26 (....		Lus10042243 [exp]	12.7	0.8632
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10024139 [exp]	14.5	0.8461
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10027742 [exp]	15.7	0.8089

Compare expression of checked genes

Lus10035262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.