Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08680 764 / 0 ATP synthase alpha/beta family protein (.1) AT5G08690 764 / 0 ATP synthase alpha/beta family protein (.1) AT5G08670 764 / 0 ATP synthase alpha/beta family protein (.1) ATCG00480 577 / 0 ATCG00480.1, ATPB ATP synthase subunit beta (.1) AT1G20260 119 / 7e-29 ATPase, V1 complex, subunit B protein (.1) AT4G38510 118 / 2e-28 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) AT1G76030 118 / 2e-28 ATPase, V1 complex, subunit B protein (.1) AT1G78900 112 / 4e-26 VHA-A vacuolar ATP synthase subunit A (.1.2) ATMG01190 101 / 1e-22 ATMG01190.1, ATP1 ATP synthase subunit 1 (.1) AT2G07698 99 / 1e-21 ATPase, F1 complex, alpha subunit protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034631 [exp] 828 / 0 AT5G08680 928 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10035264 [exp] 827 / 0 AT5G08680 925 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10034632 [exp] 777 / 0 AT5G08680 875 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10009173 [exp] 577 / 0 ATCG00480 890 / 0.0 ATP synthase subunit beta (.1) Lus10032827 [exp] 406 / 6e-140 ATCG00480 557 / 0.0 ATP synthase subunit beta (.1) Lus10035737 [exp] 117 / 1e-27 AT1G78900 1214 / 0.0 vacuolar ATP synthase subunit A (.1.2) Lus10037321 [exp] 117 / 1e-27 AT1G78900 1214 / 0.0 vacuolar ATP synthase subunit A (.1.2) Lus10034836 [exp] 117 / 1e-27 AT1G78900 1210 / 0.0 vacuolar ATP synthase subunit A (.1.2) Lus10033382 [exp] 117 / 2e-27 AT1G78900 1199 / 0.0 vacuolar ATP synthase subunit A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G116600 [exp] 788 / 0 AT5G08690 871 / 0.0 ATP synthase alpha/beta family protein (.1) Potri.008G126600 [exp] 787 / 0 AT5G08690 892 / 0.0 ATP synthase alpha/beta family protein (.1) Potri.013G162800 [exp] 579 / 0 ATCG00480 927 / 0.0 ATP synthase subunit beta (.1) Potri.007G062122 [exp] 155 / 1e-45 ATCG00480 193 / 9e-61 ATP synthase subunit beta (.1) Potri.009G137800 [exp] 116 / 9e-28 AT4G38510 966 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Potri.004G177500 [exp] 116 / 1e-27 AT4G38510 962 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Potri.010G253500 [exp] 111 / 1e-25 AT1G78900 1184 / 0.0 vacuolar ATP synthase subunit A (.1.2) Potri.008G005000 [exp] 110 / 1e-25 AT1G78900 1184 / 0.0 vacuolar ATP synthase subunit A (.1.2) Potri.007G062242 [exp] 99 / 6e-22 ATMG01190 924 / 0.0 ATP synthase subunit 1 (.1) Potri.013G138000 [exp] 91 / 4e-19 ATCG00120 933 / 0.0 ATP synthase subunit alpha (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00006 [flax] [poplar] ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain CL0023 [flax] [poplar] PF11421 [flax] [poplar] Synthase_beta ATP synthase F1 beta subunit CL0275 [flax] [poplar] HAS-barrel PF02874 [flax] [poplar] ATP-synt_ab_N ATP synthase alpha/beta family, beta-barrel domain CL0275 [flax] [poplar] PF00306 [flax] [poplar] ATP-synt_ab_C ATP synthase alpha/beta chain, C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10035263 pacid=23162377 polypeptide=Lus10035263 locus=Lus10035263.g ID=Lus10035263.BGIv1.0 annot-version=v1.0 ATGGCTTCACGCAGAATCTTATCGTCACTTCTCCGATCGGCTTCACGCCGATCTGCATCATCTTCCAACCCTAAGCTATTCTCTCCATCCCCGGTCTCCG CTCGCCGCGCATCTCCCTATGGCCACCTCCTCAACCGTACATCTGAGTACGCTACCTCCGCACCCGCCCCCCCCGCCCCCTCGCACACGGTGCTGGATAA CTCGATCCGTCTTGTGCTCGAAGTCGCCCAGCATTTGGGAGAAAACATGGTCAGAACCATTGCTATGGATGGTACTGAAGGTTTGGTCAGAGGCCAGCGC GTTCTCAACACTGGTTCTCCCATCACTGTGCCAGTGGGCAGGGCTACTCTTGGCCGCATTATGAATGTTATTGGAGAGCCTATTGATGAGAAGGGCGAAA TCTCAACCGAGCACTTCTTGCCTATCCATAGAGAAGCTCCATCCTTTGTTGAGCAGGCCACTGAGCAGCAAATCCTTGTGACTGGTATCAAGGTTGTCGA TCTCCTTGCTCCATACCAGAGGGGAGGCAAGATTGGTCTTTTTGGTGGTGCTGGTGTCGGAAAGACTGTTCTTATTATGGAACTGATCAACAATGTTGCC AAAGCCCATGGTGGTTTCTCCGTCTTTGCTGGTGTTGGGGAGCGTACCCGTGAGGGTAATGACTTGTACAGGGAAATGATTGAGAGTGGTGTCATTAAGC TAGGCGATAAGCAGGCTGACAGCAAATGTGCTCTTGTCTACGGTCAAATGAATGAGCCCCCGGGTGCTCGTGCTCGTGTTGGTCTCACTGGACTAACTGT TGCAGAACATTTCCGTGATGCTGAAGGTCAGGATGTGCTGCTCTTTGTCGACAACATTTTCCGCTTCACACAGGCTAACTCAGAAGTGTCTGCCTTGCTT GGTCGTATCCCATCTGCTGTCGGATACCAACCAACTCTTGCTACCGATCTTGGAGGACTCCAAGAGCGTATTACCACCACCAAGAAGGGGTCCATTACCT CTGTGCAAGCTATTTATGTGCCAGCTGATGATTTGACAGATCCTGCTCCTGCTACCACCTTTGCACACTTGGATGCCACAACTGTGTTGTCGCGACAGAT CTCAGAGCTGGGTATTTACCCTGCAGTGGATCCCCTAGATTCTACATCCCGTATGCTTTCTCCTCACATCCTAGGAGAGGACCACTATGGAACTGCTCGT GGCGTGCAAAAGGTTCTTCAGAACTACAAGAATCTTCAGGATATCATTGCTATTTTGGGTATGGATGAGTTGAGTGAAGACGATAAGTTGACTGTCGCCC GTGCCCGAAAGATTCAAAGGTTCTTGAGCCAGCCGTTCCATGTGGCTGAGGTCTTCACCGGTGCCCCCGGGAAGTACGTAGAGTTGAAGGAGAGCATCCA AAGTTTCCAGGGTGAGGGTGATACTGGCTTGCCCAAGGATGATATGTTCAAATTTTTCGAGACAAAAAAAGAATGCCAAACTGCTGGGAAGTTTCTCTTC TGCCTTTTGTTGTTCGAGAAACTTGACCGAAATAGACGATGGCAGTTCTGA
AA sequence Show only first row Show all	>Lus10035263 pacid=23162377 polypeptide=Lus10035263 locus=Lus10035263.g ID=Lus10035263.BGIv1.0 annot-version=v1.0 MASRRILSSLLRSASRRSASSSNPKLFSPSPVSARRASPYGHLLNRTSEYATSAPAPPAPSHTVLDNSIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQR VLNTGSPITVPVGRATLGRIMNVIGEPIDEKGEISTEHFLPIHREAPSFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA KAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFVDNIFRFTQANSEVSALL GRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEDHYGTAR GVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIQSFQGEGDTGLPKDDMFKFFETKKECQTAGKFLF CLLLFEKLDRNRRWQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08680			ATP synthase alpha/beta family...		Lus10035263 [exp]	0	1
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Lus10021870 [exp]	1.7	0.9654
AT5G08680			ATP synthase alpha/beta family...		Lus10035264 [exp]	2.2	0.9730
AT5G08680			ATP synthase alpha/beta family...		Lus10034632 [exp]	3.2	0.9675
AT3G52940		ELL1, HYD2, FK	FACKEL, EXTRA-LONG-LIFESPAN 1,...		Lus10003377 [exp]	3.9	0.9530
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10002844 [exp]	4.0	0.9430
AT2G32380			Transmembrane protein 97, pred...		Lus10027174 [exp]	4.6	0.9477
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Lus10020887 [exp]	4.9	0.9505
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Lus10029363 [exp]	5.0	0.9235
AT5G08680			ATP synthase alpha/beta family...		Lus10034631 [exp]	6.3	0.9638
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10036999 [exp]	6.6	0.9244

Compare expression of checked genes

Lus10035263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.