Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08680 860 / 0 ATP synthase alpha/beta family protein (.1) AT5G08690 859 / 0 ATP synthase alpha/beta family protein (.1) AT5G08670 858 / 0 ATP synthase alpha/beta family protein (.1) ATCG00480 618 / 0 ATCG00480.1, ATPB ATP synthase subunit beta (.1) AT1G20260 120 / 7e-29 ATPase, V1 complex, subunit B protein (.1) AT1G76030 119 / 2e-28 ATPase, V1 complex, subunit B protein (.1) AT4G38510 118 / 2e-28 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) AT1G78900 112 / 6e-26 VHA-A vacuolar ATP synthase subunit A (.1.2) ATMG01190 100 / 2e-22 ATMG01190.1, ATP1 ATP synthase subunit 1 (.1) AT2G07698 97 / 6e-21 ATPase, F1 complex, alpha subunit protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034631 [exp] 961 / 0 AT5G08680 928 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10034632 [exp] 909 / 0 AT5G08680 875 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10035263 [exp] 827 / 0 AT5G08680 782 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10009173 [exp] 614 / 0 ATCG00480 890 / 0.0 ATP synthase subunit beta (.1) Lus10032827 [exp] 425 / 8e-147 ATCG00480 557 / 0.0 ATP synthase subunit beta (.1) Lus10024114 [exp] 151 / 3e-43 AT5G08680 120 / 8e-33 ATP synthase alpha/beta family protein (.1) Lus10035737 [exp] 117 / 1e-27 AT1G78900 1214 / 0.0 vacuolar ATP synthase subunit A (.1.2) Lus10037321 [exp] 117 / 1e-27 AT1G78900 1214 / 0.0 vacuolar ATP synthase subunit A (.1.2) Lus10034836 [exp] 117 / 1e-27 AT1G78900 1210 / 0.0 vacuolar ATP synthase subunit A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G116600 [exp] 902 / 0 AT5G08690 871 / 0.0 ATP synthase alpha/beta family protein (.1) Potri.008G126600 [exp] 898 / 0 AT5G08690 892 / 0.0 ATP synthase alpha/beta family protein (.1) Potri.013G162800 [exp] 617 / 0 ATCG00480 927 / 0.0 ATP synthase subunit beta (.1) Potri.007G062122 [exp] 156 / 1e-45 ATCG00480 193 / 9e-61 ATP synthase subunit beta (.1) Potri.004G177500 [exp] 116 / 1e-27 AT4G38510 962 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Potri.009G137800 [exp] 116 / 1e-27 AT4G38510 966 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Potri.010G253500 [exp] 112 / 8e-26 AT1G78900 1184 / 0.0 vacuolar ATP synthase subunit A (.1.2) Potri.008G005000 [exp] 111 / 1e-25 AT1G78900 1184 / 0.0 vacuolar ATP synthase subunit A (.1.2) Potri.007G062242 [exp] 98 / 1e-21 ATMG01190 924 / 0.0 ATP synthase subunit 1 (.1) Potri.013G138000 [exp] 90 / 6e-19 ATCG00120 933 / 0.0 ATP synthase subunit alpha (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00006 [flax] [poplar] ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain CL0023 [flax] [poplar] PF11421 [flax] [poplar] Synthase_beta ATP synthase F1 beta subunit CL0275 [flax] [poplar] HAS-barrel PF02874 [flax] [poplar] ATP-synt_ab_N ATP synthase alpha/beta family, beta-barrel domain CL0275 [flax] [poplar] PF00306 [flax] [poplar] ATP-synt_ab_C ATP synthase alpha/beta chain, C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10035264 pacid=23162429 polypeptide=Lus10035264 locus=Lus10035264.g ID=Lus10035264.BGIv1.0 annot-version=v1.0 ATGGCTTCACGCAGAATCTTACCGTCACTTCTCCGTGCGGCATCACGCCGATCCCCTTCATCTTCCAACCCCAAGCTATTCTCTCCATCCCCGGTCTCCG CTCGCCGCGCATCTCCCTATGGCCATCTCCTCAACCGTACATCTGAGTACGCTACCTCCGCCGCCGCTCCCGCAGCTCCCGCACAATCGGCTCCTGTCAC CGCCGGCGGAAAGGGAGGAGGCAAGATAGTCGATGAGTTCACTGGTAAAGGCGCGATCGGGAAGGTCTGTCAGGTCATTGGTGCCGTCGTCGATGTCAGA TTCGACGAGGGTTTGCCTCCGATCTTGACCGCTCTCGAGGTGCTGGATAATTCAATCCGTCTTGTGCTCGAAGTCGCCCAGCATTTGGGAGAGAACATGG TCAGGACCATTGCTATGGATGGTACTGAAGGTTTGGTCAGAGGCCAGCGCGTCCTCAACACTGGTTCTCCCATCACTGTGCCTGTGGGCAGGGCTACTCT TGGCCGTATTATGAATGTTATTGGAGAGCCTATTGACGAGAAGGGCGAAATCTCGACCGAGCACTTTTTGCCCATTCATAGGGAAGCTCCATCCTTTGTT GAGCAGGCCACTGAGCAACAAATCCTTGTGACTGGTATCAAGGTTGTTGATCTTCTTGCCCCGTACCAGAGGGGAGGAAAGATTGGTCTTTTTGGTGGTG CTGGTGTCGGGAAGACAGTTCTTATCATGGAACTGATCAACAATGTTGCTAAGGCCCATGGTGGTTTCTCTGTCTTTGCTGGTGTTGGGGAGCGTACCCG TGAGGGTAATGACTTGTACAGGGAAATGATTGAGAGTGGTGTCATTAAGCTAGGCGATAAGCAGGCTGACAGCAAATGTGCTCTTGTCTACGGTCAAATG AATGAGCCCCCGGGTGCTCGTGCTCGTGTTGGTCTCACTGGACTAACTGTTGCAGAACACTTCCGTGATGCTGAAGGTCAGGATGTGCTGCTCTTTGTTG ACAACATTTTCCGATTCACCCAGGCTAACTCAGAGGTGTCTGCCCTGCTTGGTCGTATCCCGTCTGCTGTGGGTTACCAACCAACTCTGGCTACCGATCT TGGAGGACTCCAAGAGCGTATTACCACCACCAAGAAGGGGTCCATTACTTCTGTGCAAGCTATTTATGTGCCAGCCGATGATTTGACTGATCCTGCTCCT GCTACCACTTTTGCTCATTTGGATGCCACAACTGTGTTGTCACGACAGATCTCAGAACTGGGTATTTATCCTGCTGTGGATCCCCTAGATTCTACATCCC GTATGCTTTCTCCTCACATCCTAGGAGAGGACCACTATGGAACTGCTCGTGGCGTGCAAAAGGTTCTTCAGAACTACAAGAATCTTCAGGACATCATTGC TATTTTGGGTATGGATGAGCTGAGTGAAGACGACAAGTTGACTGTCGCCCGTGCCCGTAAAATTCAAAGGTTCTTGAGCCAGCCGTTCCATGTCGCTGAG GTCTTCACTGGTGCCCCCGGGAAGTACGTTGAGTTGAAGGAGAGCATCCAAAGTTTCCAGGGTGTGTTGGATGGAAAGTACGACGACTTGTCAGAACAGT CGTTCTACATGGTTGGAGGAATCGACGAGGTGATTGCCAAGGCAGAGAAGATTGCTAAGGAATCAGCCACCTCGTAA
AA sequence Show only first row Show all	>Lus10035264 pacid=23162429 polypeptide=Lus10035264 locus=Lus10035264.g ID=Lus10035264.BGIv1.0 annot-version=v1.0 MASRRILPSLLRAASRRSPSSSNPKLFSPSPVSARRASPYGHLLNRTSEYATSAAAPAAPAQSAPVTAGGKGGGKIVDEFTGKGAIGKVCQVIGAVVDVR FDEGLPPILTALEVLDNSIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIMNVIGEPIDEKGEISTEHFLPIHREAPSFV EQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQM NEPPGARARVGLTGLTVAEHFRDAEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAP ATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEDHYGTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAE VFTGAPGKYVELKESIQSFQGVLDGKYDDLSEQSFYMVGGIDEVIAKAEKIAKESATS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08680			ATP synthase alpha/beta family...		Lus10035264 [exp]	0	1
AT5G08680			ATP synthase alpha/beta family...		Lus10034632 [exp]	1.0	0.9956
AT5G08680			ATP synthase alpha/beta family...		Lus10034631 [exp]	1.4	0.9832
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10008647 [exp]	1.7	0.9748
AT5G08680			ATP synthase alpha/beta family...		Lus10035263 [exp]	2.2	0.9730
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10013680 [exp]	2.8	0.9731
AT5G07350		TSN1, AtTudor1	Arabidopsis thaliana TUDOR-SN ...		Lus10032520 [exp]	3.0	0.9629
AT3G52940		ELL1, HYD2, FK	FACKEL, EXTRA-LONG-LIFESPAN 1,...		Lus10003377 [exp]	3.3	0.9619
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Lus10041768 [exp]	3.7	0.9572
AT2G01720			Ribophorin I (.1)		Lus10040410 [exp]	3.7	0.9655
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10015205 [exp]	3.9	0.9537

Compare expression of checked genes

Lus10035264 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.