Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15130 780 / 0 Endosomal targeting BRO1-like domain-containing protein (.1) AT1G15140 350 / 9e-114 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3) AT1G20020 49 / 1e-05 ATLFNR2 ferredoxin-NADP\(+\)-oxidoreductase 2, LEAF FNR 2, ferredoxin-NADP(+)-oxidoreductase 2 (.1), ferredoxin-NADP(+)-oxidoreductase 2 (.2), ferredoxin-NADP(+)-oxidoreductase 2 (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034634 [exp] 1009 / 0 AT1G15130 1113 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10034633 [exp] 456 / 9e-155 AT1G15140 316 / 3e-108 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3) Lus10013488 [exp] 224 / 2e-68 AT1G15140 244 / 1e-82 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3) Lus10007955 [exp] 218 / 4e-66 AT1G15140 236 / 2e-79 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3) Lus10007954 [exp] 142 / 6e-39 AT1G15140 138 / 6e-41 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3) Lus10014491 [exp] 51 / 2e-06 AT5G20080 475 / 1e-170 FAD/NAD(P)-binding oxidoreductase (.1) Lus10030059 [exp] 50 / 7e-06 AT5G20080 516 / 0.0 FAD/NAD(P)-binding oxidoreductase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G126900 [exp] 839 / 0 AT1G15130 1165 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1) Potri.010G116400 [exp] 813 / 0 AT1G15130 1079 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1) Potri.008G126700 [exp] 384 / 3e-127 AT1G15140 395 / 9e-140 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3) Potri.010G116500 [exp] 379 / 1e-124 AT1G15140 368 / 1e-128 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03097 [flax] [poplar] BRO1 BRO1-like domain CL0076 [flax] [poplar] FAD_Lum_binding PF00970 [flax] [poplar] FAD_binding_6 Oxidoreductase FAD-binding domain CL0091 [flax] [poplar] NAD_Ferredoxin PF00175 [flax] [poplar] NAD_binding_1 Oxidoreductase NAD-binding domain
Representative CDS sequence Show only first row Show all	>Lus10035265 pacid=23162585 polypeptide=Lus10035265 locus=Lus10035265.g ID=Lus10035265.BGIv1.0 annot-version=v1.0 ATGTCTATCCTACGCCGCCTCTCCCCTCGCCATCTAACCTCCCATCTCCTCCTTTTCCATACAAGGCGTCTCGTCACCTTCTCCGCTACCGCCGCCGCCG TTTCGAAAGACACCACTCCCTGGATTCCAGCTCCGCTCTCCGAAATCAAACCGATAGCCGAGTCCCTCTACCACGTCAGCATCGACGTCTCTGACTCTCC CGATCTCGCCGCATCTCACACGCTCCCCGGTCAATACCTGCAGCTCCGAGTCCCCGTGGTCGATAGGCAAACTTTTTTGGCGATCGCTTCGCCGCCTTCA TTTGCCACGTCGAGAGGAGCGTTTGAGTTTCTGGTGAAGAGCGTAACTGGTTCGACGGCCGAGCTCTTATGCCGCTTGAAGAGAGGAGATGTCGTGGAAT TGAGCCATGCAATTGGGAAAGGTTTCGCGATCGATCGGATCGATCCTCCGGAGAAGCATCAGGCTGTTTTGATTTTCGCCACTGGCTCTGGCATCAGTCC AATTCGATCTCTTATTGAGTCAGGGTTTAGTGCTGACCGAAGGTCGGATGTCAGACTCTATTACGGAGCTAGAAACCTTAAGAGAATGGCTTACCAGGAT AGGTTCAAAGATTGGGAATCATCGGGTGTTAAGATTATCCCAGTACTATCGCAACCAGAGAATAGTTGGAGAGGTGAAGCTGGCTATGTACAGGCTGCAT ATGCTAGGTCAACAAAGATATCCAACCCAGCAGGTGCAGGCGCTGTGCTTTGTGGGCAAAGACAGATGGCAGAGGTTGGGCTATACTATGAGGAAGCTTT AGCTGCACTGAATGTTGCTCCTTTGAAAGATCACTTCGATAAAGCATGGGTTGCTCATGTTCAGTTGAAAGCAGCACTATTTTTCGCAGAAGCTTGCTAT CGGTATTGTTTAGAGCTGCATGAGAAGGAAGAAATTGCTGAAGAGATCGCGAGGTTGAGAATTGCAGTTAGTCACTTGGCCGAAGCCAAGAAAAACTCAA AAGGGGCGGCATCACAACTCCTGGATGCAATTAGCAAGCTCGAAGCTAACATTAATCGCAACTTAGAGAGAGCGGTAAAAGAGAATGATAGGGTATACCT AATGAGAGTTCCATCACCACATTCCTTGTCTCAGCTCCCAGCAGTTTCTTTGGTTAAGCCTATGCCTATGAATGATGTGCTGGATGCTAGCAAGGTGAAG ATGTTTGCTAGTCTTGTACCAGACAATAGTGCTAAGGCTCTTTCACGGTACACAGAAATGGTTGACGATGTTATCAGGACACAAGCAGAACAATTGCAAC AAGGGAGTGAACTTGCACGAGTACGATTGAAGGAAATGGATCTCCCAGATTCTATTCTCGTTCTAGAAGGGAGTGTGGCATTGCCCCAAGATATTAAAGA AGATGTCGAAGCGGTGCAGATTAGCGGAGGCCCTGCTGGCCTGGAAGCTGAGCTACAGCAGCTTAAGGATTTGAGGAGAGTTAACCAAGAGTTGTTAATT CAGACTGAGGAACTTCTGCAGAAGGAAGCTGCTGAGGATTCTCAGTTTAGAAGCCAATTTGGGACACGATGGACTAGGCCTCAATCAGCAACCTTGACAA AGAACCTGCAGGATAGATTGAATAGGTTTGCAGGCAACTTAAAACAAGCTGCAGAAAGTGATGCTAGAATTGAGCGGTCAGTGAGGGAAAATTATGGACT TATGGCCATACTTGATAAGCGACCGATAGAATCTGCACTTCCCACTTTGGCGCGGCCAATTATGTCACTGGACGCGAATGAAGATGCTATTGTCCGGAAC CTTAAACAATGCTTGGGCCAGTTGGAGAATCTTGGTGCCCAGCGGGCAGGCCTTGAAGATATGCTCAAAGAAATGAAAAGAAAGGACGACATTTTACCGA AGTTGATGACATCTACGGGATCACATGATGATCTGTTCAGAAAAGAGATCTCAAAGTATGATAACATTTGCCAGGACATAGCCCACAATATTGAAGCACA GGAGCAGCTGCTGTCACATATTCAGGCTGAAAATGAGAAGTTTTCTGCTGTGTTCAATCTAGAAGACTATAAAGCATCTCGTGAGAAGTGCTATAAGCAA ATACAAGCTGCAATTGCAAAGTATCGAGAGACAAAGGACAACATCAATGAAGGTTTGAAGTTCTACGTTACTCTTCAGGATGCAATAACCAACATAAAGC AGCAGTGCAGCGATTTTGTGATGACGAGAAACATCCAGTGCCGAGAAATGATAGAAGACGTACAAAGACAGATGGCTGGATTGAGTTTCCAGGATCGCAA GAACTCAGGAGGACCTTACAACAGCTATCCCATGGTGAATCAGTCTCAGCGATCCTCAACACAGCCTCCGGCAGACCCTCCAAACGTGCAACATAGTCAC CCGCCACAACAGCCACCTCCTTACTATCAACCCCATGAACCGACAACAACGATGCCAGGATACTCTCACCCTCCACCCCCATACAACACTTCACAGCCAC AGCCGCCGCCTCCGTATCACATCCACCCGACACCCGGTGCTCCTTACCCACCCCCTCATGTCCAACAGCAGCAACCGCCACAGACAGGACAAGAGTATGG CCAGCCGGCCTATCCCGGATGGCGGGGTCCATACTACAACTCTCATCCCCAGCAGCAGCAGCAGCAACAAGGGGGTATGCCGCGGCCTCCCTACACAGTT CCAGGGCCTTATCCTCCCTATTACAAATGA
AA sequence Show only first row Show all	>Lus10035265 pacid=23162585 polypeptide=Lus10035265 locus=Lus10035265.g ID=Lus10035265.BGIv1.0 annot-version=v1.0 MSILRRLSPRHLTSHLLLFHTRRLVTFSATAAAVSKDTTPWIPAPLSEIKPIAESLYHVSIDVSDSPDLAASHTLPGQYLQLRVPVVDRQTFLAIASPPS FATSRGAFEFLVKSVTGSTAELLCRLKRGDVVELSHAIGKGFAIDRIDPPEKHQAVLIFATGSGISPIRSLIESGFSADRRSDVRLYYGARNLKRMAYQD RFKDWESSGVKIIPVLSQPENSWRGEAGYVQAAYARSTKISNPAGAGAVLCGQRQMAEVGLYYEEALAALNVAPLKDHFDKAWVAHVQLKAALFFAEACY RYCLELHEKEEIAEEIARLRIAVSHLAEAKKNSKGAASQLLDAISKLEANINRNLERAVKENDRVYLMRVPSPHSLSQLPAVSLVKPMPMNDVLDASKVK MFASLVPDNSAKALSRYTEMVDDVIRTQAEQLQQGSELARVRLKEMDLPDSILVLEGSVALPQDIKEDVEAVQISGGPAGLEAELQQLKDLRRVNQELLI QTEELLQKEAAEDSQFRSQFGTRWTRPQSATLTKNLQDRLNRFAGNLKQAAESDARIERSVRENYGLMAILDKRPIESALPTLARPIMSLDANEDAIVRN LKQCLGQLENLGAQRAGLEDMLKEMKRKDDILPKLMTSTGSHDDLFRKEISKYDNICQDIAHNIEAQEQLLSHIQAENEKFSAVFNLEDYKASREKCYKQ IQAAIAKYRETKDNINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQRQMAGLSFQDRKNSGGPYNSYPMVNQSQRSSTQPPADPPNVQHSH PPQQPPPYYQPHEPTTTMPGYSHPPPPYNTSQPQPPPPYHIHPTPGAPYPPPHVQQQQPPQTGQEYGQPAYPGWRGPYYNSHPQQQQQQQGGMPRPPYTV PGPYPPYYK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15130			Endosomal targeting BRO1-like ...		Lus10035265 [exp]	0	1
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10029591 [exp]	1.4	0.9255
AT1G61690			phosphoinositide binding (.1)		Lus10018391 [exp]	1.7	0.9069
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10026741 [exp]	2.8	0.8988
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10035827 [exp]	2.8	0.9077
AT3G58050			unknown protein		Lus10021073 [exp]	3.9	0.9045
AT2G25430			epsin N-terminal homology (ENT...		Lus10001502 [exp]	4.9	0.9057
AT1G15130			Endosomal targeting BRO1-like ...		Lus10034634 [exp]	6.0	0.8935
AT1G32540		LOL1	lsd one like 1 (.1.2.3)		Lus10038409 [exp]	7.7	0.8600
AT5G66760		SDH1-1	succinate dehydrogenase 1-1 (....		Lus10041739 [exp]	7.7	0.9024
AT2G04620			Cation efflux family protein (...		Lus10013358 [exp]	8.1	0.8756

Compare expression of checked genes

Lus10035265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.