Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71120 347 / 1e-119 GLIP6 GDSL-motif lipase/hydrolase 6 (.1) AT5G15720 140 / 5e-39 GLIP7 GDSL-motif lipase 7 (.1) AT2G19010 135 / 2e-37 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 134 / 6e-37 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT2G19050 134 / 7e-37 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G42170 134 / 9e-37 SGNH hydrolase-type esterase superfamily protein (.1) AT1G71250 132 / 6e-36 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G55050 132 / 1e-35 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G03810 130 / 2e-35 GDSL-like Lipase/Acylhydrolase family protein (.1) AT1G06990 130 / 3e-35 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034635 [exp] 429 / 1e-151 AT1G71120 379 / 8e-131 GDSL-motif lipase/hydrolase 6 (.1) Lus10041877 [exp] 152 / 9e-44 AT3G14820 321 / 1e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028423 [exp] 150 / 5e-43 AT3G14820 317 / 7e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028424 [exp] 142 / 1e-39 AT3G14820 298 / 2e-99 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034542 [exp] 138 / 4e-38 AT1G75900 340 / 6e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003720 [exp] 135 / 4e-37 AT5G42170 337 / 1e-114 SGNH hydrolase-type esterase superfamily protein (.1) Lus10003717 [exp] 134 / 1e-36 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028425 [exp] 136 / 6e-36 AT1G75900 333 / 8e-109 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 132 / 7e-36 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G127100 [exp] 373 / 6e-130 AT1G71120 479 / 9e-171 GDSL-motif lipase/hydrolase 6 (.1) Potri.007G133500 [exp] 151 / 6e-43 AT3G14225 296 / 7e-98 GDSL-motif lipase 4 (.1) Potri.017G102100 [exp] 146 / 2e-41 AT5G15720 264 / 5e-86 GDSL-motif lipase 7 (.1) Potri.004G112700 [exp] 146 / 3e-41 AT5G15720 249 / 7e-80 GDSL-motif lipase 7 (.1) Potri.007G133766 [exp] 142 / 1e-39 AT3G14225 291 / 4e-96 GDSL-motif lipase 4 (.1) Potri.005G242800 [exp] 142 / 1e-39 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G137100 [exp] 138 / 2e-38 AT1G71691 221 / 3e-69 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G102500 [exp] 136 / 2e-37 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G076600 [exp] 135 / 5e-37 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.002G018800 [exp] 135 / 7e-37 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10035266 pacid=23162580 polypeptide=Lus10035266 locus=Lus10035266.g ID=Lus10035266.BGIv1.0 annot-version=v1.0 ATGGCGGCAATCAAGCCTCCTCCTTTAACGCTTGCTGTTAACGTAATAGTAACGTTTTCATGTGTGCTTGGGACGTTTGCGGTGGTTCCGACTGCAATCT TCACATTCGGGGACTCATTGTTCGACGCTGGAACCAACCATTTCAACAAGAATTGCACTGCACAGGCTGATTTCCCTCCCTACGGTTCTTCCTTCTTCCA CCGCCCTACCGGCAGGTTCACCAACGGCCGCACCGTCCCCGATTTCATTTGTGAATTCATGGGAATAGAGTTGCAGAGTTCATTCCTGGAGGCAGAGATG CAAGTGTTGAACGGTAGTTGGAAGAGTTACCCTTCCAATGGCATTAACTTCGCTAGTGCTGGCAGCGGCGTCTTCCCTTCTACCAACCAATTTCTCGGAG TGACACCAATCCAGGAGCAGCTGCAGCAATTCAAAACCCTAATCAATCAGAACCAATTCCAAAACCCTCAAATCGCCAAATCAATCTTCTTGCTGGAATC CGGATCCAACGATATCTTCAACTACTTCCTCCCCTTTGGTACCCCAACCCTCCAACCAGATGCCTATGTCAAGTCAATGCTCTCGCAGGTCTCCACCTTC ATCTCCCAAATCTACACCCTCGGAGCTCGCCGCATCGCCGTCTTCTCCCTCGGCCCCGTTGGCTGCGTTCCGGCCAGGGCGCTCCTCCCTGACTCTCCCG TCGACAAATGCGATGAGAGGATCAACTCCATGGTTCGGATGTACAATTCGGGACTTGAAGCGCTGGTGAAGGGTATTCCGGTCAAGTTCCCTGGCGCCGT CGCGGTTTTCGGGGATGTTTTCGGTATTGTACAGCGTTTTAGGGCCGACCCGCCTCGATACGGTGCGTTTTGA
AA sequence Show only first row Show all	>Lus10035266 pacid=23162580 polypeptide=Lus10035266 locus=Lus10035266.g ID=Lus10035266.BGIv1.0 annot-version=v1.0 MAAIKPPPLTLAVNVIVTFSCVLGTFAVVPTAIFTFGDSLFDAGTNHFNKNCTAQADFPPYGSSFFHRPTGRFTNGRTVPDFICEFMGIELQSSFLEAEM QVLNGSWKSYPSNGINFASAGSGVFPSTNQFLGVTPIQEQLQQFKTLINQNQFQNPQIAKSIFLLESGSNDIFNYFLPFGTPTLQPDAYVKSMLSQVSTF ISQIYTLGARRIAVFSLGPVGCVPARALLPDSPVDKCDERINSMVRMYNSGLEALVKGIPVKFPGAVAVFGDVFGIVQRFRADPPRYGAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71120		GLIP6	GDSL-motif lipase/hydrolase 6 ...		Lus10035266 [exp]	0	1
AT1G06260			Cysteine proteinases superfami...		Lus10002184 [exp]	11.2	0.9936
AT1G50310		ATSTP9	sugar transporter 9 (.1)		Lus10040993 [exp]	15.2	0.9925
					Lus10026755 [exp]	19.6	0.9923
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10008511 [exp]	22.6	0.9923
					Lus10016593 [exp]	25.3	0.9923
AT5G13620			unknown protein		Lus10017168 [exp]	27.7	0.9923
					Lus10001326 [exp]	29.9	0.9923
AT2G43610			Chitinase family protein (.1)		Lus10020253 [exp]	32.0	0.9923
AT4G35220			Cyclase family protein (.1)		Lus10019823 [exp]	33.9	0.9923
					Lus10021612 [exp]	35.8	0.9923

Compare expression of checked genes

Lus10035266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.