Plant FIBer expression Database

Lus10035267 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10035267 pacid=23162470 polypeptide=Lus10035267 locus=Lus10035267.g ID=Lus10035267.BGIv1.0 annot-version=v1.0
ATGTCAGGTTCTCCGCCTGATTCCCTTCGGCCTTTGCCGGTCAATCCGGTTGATCGGCCGCCAGAGCAAGCTATTGAAGAGGGTGGTATTATTCCCAATA
CTACCCAACGTGATATTGATATGATACGGTTGCCGATCCCACCGGCTGAGACTTCCAAGGCTGTTTTCTATGCGTCCATGGTTGCAGGCTTGGTGCTTCT
CGAGCGAGTGCTTGCCCATCGGCGGATCCGGGGGATGTACGCTGGAGATCACGAAGCAGTGTTGTATCTAAACAAAGAGTTGGGGGGACGAAATGGGCCT
TCAGATAAGAGTTTGACTACTAGGCCTATTAATTCTAAAGGAACAAATGAGCCCATTGCTAAGAGGAATAATATTCAGCATAATATTAATCCGACCCAAG
ACTCTAGTTTTGTGGTGCATCTTCCCAACGACCATGAAGCCTCAACTTCAACTCCTACTACTACTTCTCAGAAACCTTCTCTGAACACCCAAGTCAAACC
TTCAGCACTTTTCCTCGCGTTACAAAAGGCAGCTTCTATTGTCAAATCGCGTCCGACCGTCAATAGTGATAACACATCTCCTCCAATGCCTCCGTCGTCA
TCACCAACTAAACAAGGGTTTAAGCAGCAAAATCTTATTCTCCGTACTTCCTCTTCCGATAAGCGTCGAGATAAGATTGGGAGCTTACTTCCCTCTCTCC
GTGGGGTATCCCAAGTCTGCAATAAGCCGAAAGTCAAGCTTCGTGGAAAGAAATCCTCCCCTAAATTGGAGCAAAAACTCACTCTGGAAGGAATTTTGAT
AGCCGATGAAAAGGGTCGATTTGTTCCTGTTGTTCGTGCTAATTGCCTCAAACAAAATGACCAGCTTCTCAATGAAGATAAATCAATGAAGGAAGATGGC
ATGAACTTTGATCTTAATTCGCGTTAG
AA sequence
>Lus10035267 pacid=23162470 polypeptide=Lus10035267 locus=Lus10035267.g ID=Lus10035267.BGIv1.0 annot-version=v1.0
MSGSPPDSLRPLPVNPVDRPPEQAIEEGGIIPNTTQRDIDMIRLPIPPAETSKAVFYASMVAGLVLLERVLAHRRIRGMYAGDHEAVLYLNKELGGRNGP
SDKSLTTRPINSKGTNEPIAKRNNIQHNINPTQDSSFVVHLPNDHEASTSTPTTTSQKPSLNTQVKPSALFLALQKAASIVKSRPTVNSDNTSPPMPPSS
SPTKQGFKQQNLILRTSSSDKRRDKIGSLLPSLRGVSQVCNKPKVKLRGKKSSPKLEQKLTLEGILIADEKGRFVPVVRANCLKQNDQLLNEDKSMKEDG
MNFDLNSR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10035267
[exp]
0 1
Lus10022119
[exp]
7.7 0.8519
AT4G27120 unknown protein Lus10011161
[exp]
12.2 0.8813
AT1G18260 HRD3A, EBS5 EMS-mutagenized bri1 suppresso... Lus10009047
[exp]
13.4 0.8804
AT1G01750 ADF11 actin depolymerizing factor 11... Lus10008489
[exp]
16.9 0.8596
Lus10013985
[exp]
17.9 0.8224
AT5G24270 ATSOS3, CBL4, S... CALCINEURIN B-LIKE PROTEIN 4, ... Lus10004006
[exp]
23.9 0.8579
AT4G04740 CPK23, ATCPK23 calcium-dependent protein kina... Lus10022624
[exp]
26.7 0.8563
AT1G50680 AP2_ERF AP2/B3 transcription factor fa... Lus10036282
[exp]
31.2 0.8491
AT4G39952 Pentatricopeptide repeat (PPR)... Lus10010688
[exp]
32.7 0.8546
AT5G34940 ATGUS3 glucuronidase 3 (.1.2.3) Lus10001922
[exp]
39.1 0.8474

Lus10035267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.