Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03280 110 / 9e-31 unknown protein AT5G17350 110 / 1e-30 unknown protein AT4G02090 56 / 1e-09 unknown protein AT2G23690 54 / 2e-09 unknown protein AT4G37240 52 / 2e-08 unknown protein AT5G66580 50 / 7e-08 unknown protein AT5G12340 42 / 0.0001 unknown protein AT3G61920 39 / 0.0007 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013490 [exp] 233 / 4e-79 AT3G03280 110 / 6e-31 unknown protein Lus10034636 [exp] 232 / 5e-79 AT5G17350 92 / 5e-24 unknown protein Lus10007960 [exp] 227 / 3e-76 AT3G03280 109 / 3e-30 unknown protein Lus10017620 [exp] 93 / 4e-24 AT5G17350 83 / 2e-20 unknown protein Lus10010014 [exp] 59 / 1e-10 AT4G02090 127 / 2e-36 unknown protein Lus10016785 [exp] 45 / 5e-06 AT2G23690 138 / 4e-42 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G116000 [exp] 232 / 9e-79 AT3G03280 131 / 4e-39 unknown protein Potri.008G127200 [exp] 231 / 4e-78 AT3G03280 127 / 2e-37 unknown protein Potri.004G094000 [exp] 155 / 2e-48 AT3G03280 143 / 1e-43 unknown protein Potri.017G121200 [exp] 150 / 2e-46 AT3G03280 145 / 7e-45 unknown protein Potri.004G149800 [exp] 69 / 3e-15 AT5G66580 91 / 7e-24 unknown protein Potri.006G105600 [exp] 69 / 1e-14 AT3G03280 63 / 9e-13 unknown protein Potri.015G036800 [exp] 68 / 2e-14 AT1G18290 122 / 1e-35 unknown protein Potri.006G105500 [exp] 67 / 2e-14 AT3G03280 65 / 2e-13 unknown protein Potri.012G045600 [exp] 66 / 6e-14 AT1G18290 129 / 1e-38 unknown protein Potri.002G196900 [exp] 63 / 2e-12 AT4G02090 92 / 3e-23 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035268 pacid=23162506 polypeptide=Lus10035268 locus=Lus10035268.g ID=Lus10035268.BGIv1.0 annot-version=v1.0 ATGGGGAACTACGTCTCCTGCACACTGGCAACTCCACTGATCAAGACCGGCAAAGCGGCTCGCGTTGTGTTCCCCTGCGGCGAGGTGCGGCAGTTCCGCT CTCCGATCAAAGCCGCCGAGATCATGTTTGACTGCCCCAATTTCTTCCTAGCCAACTCCCAATCCCTCCACATCGGCCGCAGATTCTCTCCCTTACCTGC CGACGAAGAGCTGGAGCTCGGCAACGTCTACCTCCTGTTCCCGATGAAGAGATCCAGCTCCGTCGTCACCTCCGCCGACATGGCCGTGTTTTTCCTGGCG GCGAATTCGGCCGCCAAGCGGATCTCCGGATTCAAAGGACCAGTCGGCGTAAGGATCCAGCCAGATTGCGGATCTGGAGACATGAGCCAGGCGGAGGAAG GATCGGCGCGAGGAGGGAGACAGAGCTTGGAGGAAGTAGCAGAGGAGTTGGAAGTCCCAGGGGAGTTTAAGTACAGGCTGTCGATGTGCCGGTCAAGGAA GCCGATGCTGGAGACCATCAAGGAAGAGCCCGCGGTTCTGTCCAGGTGA
AA sequence Show only first row Show all	>Lus10035268 pacid=23162506 polypeptide=Lus10035268 locus=Lus10035268.g ID=Lus10035268.BGIv1.0 annot-version=v1.0 MGNYVSCTLATPLIKTGKAARVVFPCGEVRQFRSPIKAAEIMFDCPNFFLANSQSLHIGRRFSPLPADEELELGNVYLLFPMKRSSSVVTSADMAVFFLA ANSAAKRISGFKGPVGVRIQPDCGSGDMSQAEEGSARGGRQSLEEVAEELEVPGEFKYRLSMCRSRKPMLETIKEEPAVLSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17350			unknown protein		Lus10035268 [exp]	0	1
AT3G45970		ATHEXPBETA2.1, ...	EXPANSIN L1, expansin-like A1 ...		Lus10022639 [exp]	2.4	0.8634
AT5G05340			Peroxidase superfamily protein...		Lus10029065 [exp]	4.7	0.8366
AT1G32250			Calcium-binding EF-hand family...		Lus10030986 [exp]	6.0	0.8687
AT4G27280			Calcium-binding EF-hand family...		Lus10033753 [exp]	6.5	0.8734
					Lus10039878 [exp]	6.7	0.8439
AT3G45970		ATHEXPBETA2.1, ...	EXPANSIN L1, expansin-like A1 ...		Lus10003336 [exp]	6.7	0.8293
AT5G42050			DCD (Development and Cell Deat...		Lus10032412 [exp]	6.9	0.8597
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10026637 [exp]	9.5	0.8399
AT1G01540			Protein kinase superfamily pro...		Lus10036386 [exp]	9.8	0.8188
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10041632 [exp]	11.8	0.8311

Compare expression of checked genes

Lus10035268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.