Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01275 186 / 2e-58 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G38070 143 / 1e-41 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14260 123 / 9e-34 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT2G02960 123 / 9e-34 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) AT3G47550 122 / 1e-33 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) AT5G62460 108 / 9e-28 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G02610 93 / 1e-22 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G02075 91 / 6e-22 PIT1 pitchoun 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G34100 59 / 1e-09 RING/U-box superfamily protein (.1.2) AT4G32670 54 / 4e-08 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034640 [exp] 446 / 4e-160 AT2G01275 202 / 3e-64 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10013491 [exp] 282 / 2e-92 AT5G13240 299 / 1e-99 transcription regulators (.1) Lus10004058 [exp] 217 / 3e-70 AT2G01275 251 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10002282 [exp] 181 / 7e-56 AT5G38070 219 / 6e-71 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10007961 [exp] 134 / 7e-37 AT5G13240 260 / 2e-86 transcription regulators (.1) Lus10012826 [exp] 132 / 1e-36 AT2G02960 310 / 2e-106 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10030472 [exp] 130 / 8e-36 AT2G02960 221 / 4e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10021670 [exp] 125 / 6e-34 AT3G47550 275 / 7e-92 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10019102 [exp] 119 / 1e-31 AT3G47550 295 / 5e-100 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G115600 [exp] 293 / 7e-100 AT2G01275 248 / 1e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.008G127400 [exp] 286 / 2e-97 AT2G01275 266 / 1e-89 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.004G093500 [exp] 228 / 1e-74 AT2G01275 238 / 9e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.017G122300 [exp] 198 / 4e-63 AT2G01275 246 / 4e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.008G086300 [exp] 140 / 4e-40 AT2G02960 252 / 9e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.010G169200 [exp] 137 / 5e-39 AT3G47550 253 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Potri.013G126600 [exp] 111 / 2e-29 AT2G02960 159 / 9e-48 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.019G111700 [exp] 111 / 3e-29 AT2G02960 156 / 1e-46 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.014G121900 [exp] 103 / 2e-26 AT1G02610 181 / 2e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.002G196600 [exp] 99 / 7e-25 AT1G02610 183 / 2e-58 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0229 [flax] [poplar] PF12428 [flax] [poplar] DUF3675 Protein of unknown function (DUF3675)
Representative CDS sequence Show only first row Show all	>Lus10035271 pacid=23162397 polypeptide=Lus10035271 locus=Lus10035271.g ID=Lus10035271.BGIv1.0 annot-version=v1.0 ATGGGAGATCATTTTGTGTTGTTGGTGGACCGGCTGTTAACCGAATCAACACTAGAAGCTGCAATCGAGAGCAGGCTTCGGTCTATGCAAGCCACTGCTT CTGGAGTGGATGATGATGATTTGGAAGTGGAAAAGCCTTATCAGAATATCGATTTCGACGATATATCGACACCCAGGAAGATAGTGGAATGCAGGATATG CCAAGATGATGATGTAGATTCCAACATGGAGACGCCTTGCTCTTGTTGTGGCAGCCTCAAGTATGCTCACAGGAGATGTATACAAAAGTGGTGTAACGAG AAGGGGAACACTACATGTGAAATATGTCAACAGCCATTCAAGCCTGGTTATACAGCCCCACCACCTTTGTTTCATTTTGGACGTATACCAATAAACCTGA GAGGAAGTCGGGAAATGTCTCGAAGAGAAATACGGGGTCCTCGCTTCGTGGCGGTGGTCTCGACAGAACACAATCTTGCTAGTCCTGATTATGATAGCCA TTCGACATATGCTACGAGAAGCGTGATGTGCTTCCGCTCCGTAGCCATCATTATTATGATACTTCTGCTACTAAGGCATACACTTCCCATATTACTTTCT GAAAGTGTCCATATCTCCATCCCTCTATTGTTGTTGATATTGCTACGTATCACTGGAATCATTCTCCCAATCTATGTCATGGTGAAATCTTTAAATGCTT TTCAACAACGCCGCCAACAACAGGAAGTTCCTTCATCTGACGACGAACCTGAAGAGGCTGAGCATCAGTCGGCCCTGCAAGTCGAGTCGCACATAATCAA TGTCCATTAG
AA sequence Show only first row Show all	>Lus10035271 pacid=23162397 polypeptide=Lus10035271 locus=Lus10035271.g ID=Lus10035271.BGIv1.0 annot-version=v1.0 MGDHFVLLVDRLLTESTLEAAIESRLRSMQATASGVDDDDLEVEKPYQNIDFDDISTPRKIVECRICQDDDVDSNMETPCSCCGSLKYAHRRCIQKWCNE KGNTTCEICQQPFKPGYTAPPPLFHFGRIPINLRGSREMSRREIRGPRFVAVVSTEHNLASPDYDSHSTYATRSVMCFRSVAIIIMILLLLRHTLPILLS ESVHISIPLLLLILLRITGIILPIYVMVKSLNAFQQRRQQQEVPSSDDEPEEAEHQSALQVESHIINVH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01275			RING/FYVE/PHD zinc finger supe...		Lus10035271 [exp]	0	1
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10037751 [exp]	9.9	0.9490
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10041195 [exp]	10.7	0.9193
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Lus10000411 [exp]	11.8	0.9295
AT5G47720			Thiolase family protein (.1.2....		Lus10039109 [exp]	13.6	0.9487
AT2G24370			Protein kinase protein with ad...		Lus10021596 [exp]	14.8	0.9355
AT3G15260			Protein phosphatase 2C family ...		Lus10005405 [exp]	17.1	0.9399
AT2G01275			RING/FYVE/PHD zinc finger supe...		Lus10034640 [exp]	19.1	0.9066
AT5G47530			Auxin-responsive family protei...		Lus10017564 [exp]	23.9	0.8820
AT3G15290			3-hydroxyacyl-CoA dehydrogenas...		Lus10020828 [exp]	24.0	0.9348
AT2G23790			Protein of unknown function (D...		Lus10016799 [exp]	25.6	0.9351

Compare expression of checked genes

Lus10035271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.