Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71110 474 / 4e-163 unknown protein AT2G12400 192 / 1e-54 unknown protein AT2G25270 177 / 3e-49 unknown protein AT1G80540 133 / 2e-33 unknown protein AT5G67550 46 / 4e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013492 [exp] 593 / 0 AT1G71110 645 / 0.0 unknown protein Lus10007962 [exp] 578 / 0 AT1G71110 578 / 0.0 unknown protein Lus10034641 [exp] 409 / 7e-138 AT1G71110 587 / 0.0 unknown protein Lus10038102 [exp] 320 / 7e-104 AT2G25270 468 / 5e-161 unknown protein Lus10001945 [exp] 202 / 2e-58 AT2G25270 650 / 0.0 unknown protein Lus10008028 [exp] 190 / 8e-54 AT2G12400 641 / 0.0 unknown protein Lus10008813 [exp] 182 / 6e-51 AT2G12400 616 / 0.0 unknown protein Lus10001929 [exp] 141 / 6e-36 AT2G25270 457 / 3e-156 unknown protein Lus10014341 [exp] 119 / 9e-29 AT2G25270 352 / 7e-116 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G115500 [exp] 348 / 7e-114 AT1G71110 646 / 0.0 unknown protein Potri.018G023200 [exp] 197 / 2e-56 AT2G25270 595 / 0.0 unknown protein Potri.006G060600 [exp] 184 / 9e-52 AT2G12400 579 / 0.0 unknown protein Potri.006G258700 [exp] 184 / 1e-51 AT2G25270 590 / 0.0 unknown protein Potri.018G120200 [exp] 177 / 4e-49 AT2G12400 596 / 0.0 unknown protein Potri.007G132601 [exp] 112 / 2e-26 AT5G67550 189 / 8e-54 unknown protein Potri.017G023400 [exp] 102 / 6e-23 AT5G67550 182 / 3e-51 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035272 pacid=23162495 polypeptide=Lus10035272 locus=Lus10035272.g ID=Lus10035272.BGIv1.0 annot-version=v1.0 ATGTCTTCAATCGTGGGGTTCCGGCTGTTTTTGGCCTTGTGGGTTGCTGTTTCTTTCAGCTGCTCTGGCGTTTCAGCTCACCTTCAGAACGATGAATCTA CCGACTACAGCTACTCCTCCAAGTCCTCGTTAGGACAAGTGAGTTTGGGATCATGGGAGGATACTAGTGCACAAGCGCCTGGGCCGTCTAACGATGGTTC AAAGAGTATTCTTCTGTTAGCAGCTGAGAGGACTGATCGGCCTGACATACTCAACGGATTTAAGCACTATAGAGGAGGTTGGGACATCACCAATCGCCAT TATGGGCCCATCACCAATCGCCATTACTGGGCTTCTGTTGGATTCACCGGGGCGTCTGGTTTCATCTTGGCAGTCTTGTGGTTCTTCTCCTTCGGATTGG CTGTTTTAGTTCATCATTTCTGTGGATGGAAGGTGAAATTTGAAGAAAGAGGGTTGATTGCTCACAGGATATGTCTCATATTGCTCATAGTGTTCACATG TTCCGCAGCGATCGGATGCATCCTTCTTTCTGTTGGCCAGGGTGAGTTCCACGGAGAAGCTATGGATACACTGAAGTATGTTGTAAACCAATCAGATTAC ACAGTCCAAATCCTCCGGAATGTCACGGAGTATCTTTCCCTTGCAAAGACCATCAAAGTGGCCCAAGTTCTTCTTCCTTCTAAAACCATGGACAACATTG ACAAATTGAATTTGGATTTAAATGCTGTTGCCAATACACTCGAGGACAAGACACATGAAAATTCTCAAAAGATCACGACTGTGTTCATTGCTGTGCGGTC TGCACTAATTGCCATCGCTATGGTGATGCTTGTACTTGCCGTTGTTGGTTTTGTATTGTCCATTCTTGGTCACCAGCATGCAATTTACATATTCGTGACG AGCGGCTGGTTGTTGGTAGCAATAACGTTCATTCTTTGTGGTGTTTTCATTATCTTCCACAAAAACGAATTCAACTACTACAACCAGTCCGGACCTCCCA TGCCTCCCATGTGTTTCTTGTTCAACTCGCAACTCCATGAACGCCAATGCGCTGTCCAAGAAGTCTCAGTGGCTAATGCCTCTTTGGTGTGGCAAAGCTA TGTATGCCAAGTTTCGTCGTCAGGGAAATGCACAACTGCTGGAAGGGTGACACCAGACGTTTACAGGCAGTTGGTGGCAGCTGTGAACGAAACCTATGCG CTCGAATACTACACTCCGCTTCTGCTCAGTCTTCAGGACTGCAAATTCGTAAGGGAAACCTTCCGGGAAATCACCTCAACTTATTGTCCTCCATTGGAGC ATTACCTTCAGCTCATAAATGCAGGTCTTGGATTGATCTCTGTCGGTGTTTTGCTCTGTTTAGTTCTCTGGATACTCTACGCAAACCGACCCCAAAGGGA GGAAGCGTTTGCCAAGCTGTGGTTTCCCGTTAAAGGTGGCAGCAGTATGAGCAAGAAAAACCAGTTCCCTCCGAGGAACAAATGCAGTGACAGTATATGT AATGTGTCTTTGTCAAATACAAATGCAGGTATTAATTAG
AA sequence Show only first row Show all	>Lus10035272 pacid=23162495 polypeptide=Lus10035272 locus=Lus10035272.g ID=Lus10035272.BGIv1.0 annot-version=v1.0 MSSIVGFRLFLALWVAVSFSCSGVSAHLQNDESTDYSYSSKSSLGQVSLGSWEDTSAQAPGPSNDGSKSILLLAAERTDRPDILNGFKHYRGGWDITNRH YGPITNRHYWASVGFTGASGFILAVLWFFSFGLAVLVHHFCGWKVKFEERGLIAHRICLILLIVFTCSAAIGCILLSVGQGEFHGEAMDTLKYVVNQSDY TVQILRNVTEYLSLAKTIKVAQVLLPSKTMDNIDKLNLDLNAVANTLEDKTHENSQKITTVFIAVRSALIAIAMVMLVLAVVGFVLSILGHQHAIYIFVT SGWLLVAITFILCGVFIIFHKNEFNYYNQSGPPMPPMCFLFNSQLHERQCAVQEVSVANASLVWQSYVCQVSSSGKCTTAGRVTPDVYRQLVAAVNETYA LEYYTPLLLSLQDCKFVRETFREITSTYCPPLEHYLQLINAGLGLISVGVLLCLVLWILYANRPQREEAFAKLWFPVKGGSSMSKKNQFPPRNKCSDSIC NVSLSNTNAGIN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71110			unknown protein		Lus10035272 [exp]	0	1
AT1G71110			unknown protein		Lus10034641 [exp]	1.4	0.8340
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10025101 [exp]	5.7	0.8453
AT1G63670			Protein of unknown function (D...		Lus10035490 [exp]	6.2	0.8026
					Lus10018660 [exp]	8.5	0.8323
AT4G03415			Protein phosphatase 2C family ...		Lus10039802 [exp]	9.2	0.8237
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10029594 [exp]	10.0	0.8218
					Lus10014040 [exp]	12.0	0.8128
AT1G62870			unknown protein		Lus10004325 [exp]	12.4	0.8299
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10022368 [exp]	13.4	0.8335
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10040558 [exp]	15.2	0.8200

Compare expression of checked genes

Lus10035272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.