Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08160 239 / 6e-78 ATPK3 serine/threonine protein kinase 3 (.1.2) AT2G32850 60 / 3e-10 Protein kinase superfamily protein (.1.2) AT2G25880 46 / 8e-06 ATAUR2 ataurora2 (.1.2) AT3G59830 46 / 1e-05 Integrin-linked protein kinase family (.1) AT1G12680 45 / 4e-05 PEPKR2 phosphoenolpyruvate carboxylase-related kinase 2 (.1) AT4G32830 40 / 0.0007 ATAUR1 ataurora1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034642 [exp] 372 / 2e-130 AT5G08160 499 / 4e-179 serine/threonine protein kinase 3 (.1.2) Lus10013493 [exp] 244 / 1e-79 AT5G08160 592 / 0.0 serine/threonine protein kinase 3 (.1.2) Lus10007963 [exp] 239 / 4e-78 AT5G08160 597 / 0.0 serine/threonine protein kinase 3 (.1.2) Lus10003916 [exp] 60 / 4e-10 AT2G32850 661 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037472 [exp] 59 / 8e-10 AT2G32850 660 / 0.0 Protein kinase superfamily protein (.1.2) Lus10009358 [exp] 41 / 0.0006 AT4G32250 677 / 0.0 Protein kinase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G055200 [exp] 248 / 1e-81 AT5G08160 600 / 0.0 serine/threonine protein kinase 3 (.1.2) Potri.012G057300 [exp] 244 / 5e-80 AT5G08160 610 / 0.0 serine/threonine protein kinase 3 (.1.2) Potri.001G228100 [exp] 63 / 3e-11 AT2G32850 717 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G247400 [exp] 43 / 0.0001 AT3G10660 253 / 2e-76 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.006G235000 [exp] 40 / 0.0007 AT4G32830 553 / 0.0 ataurora1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10035273 pacid=23162559 polypeptide=Lus10035273 locus=Lus10035273.g ID=Lus10035273.BGIv1.0 annot-version=v1.0 ATGGGCTGTTCCTTCTCCGGCCTCAATGCACTCTACGACGCTGTCAACGGCGGTGGTGATGTCTGGATCAACGACGTCCGTTTCCGAATCCTCAGGCAGC TTGGCGAAGGAGGCTTCGCCTTTGTTTTCCTGGTCAAGGAGGTCCCCGCCGACAACTCTTCCGCCGCCGGCGCTGGACTCGCCGCCAAAGTCAAGGACAA ATCCCACCTTTCTGAGGATGGGGCTTATGCAATGAAGAAGGTTCTGATTCAGAACAATGAGCAGCTGGAGCTGAATACTCAAGAAGGCTCCTGGAACAAT GAAGCATATTTGTTGTTTCCAGTGCACTTGGATGGAACCTTACTGGACAATTCAAAAGCCATGTCAGCAAAGAGAGAGTTCTTTTCAACCTCAGATGTCC TTGAAATCTTCCGGCAGGAATGGGCAGCAGAGCACTGTTCGGCACCAATTCGAGCTCCTGAGTTGTGGGATTGCCCAAGTCATGCTGATATTGATGAGAG AACTGATGTTTGGTCTCTGGGATGCACACTTTATGCCATCATGTATGGTGTATCTCCATTCGAGTATGCTCTTGGAGAGTCTGGAGGGAGCCTACAACTA GCCGTTTTGAATGCACAGATAAAATGGCCAACCGGACCTAAGTCTGCATATCCAGAAGCATTGCACCAGTTTGTGACATGGATGCTTCAGCCACAAGCCA CCATGCGCCCTCGCATCGACGACATTATCATTCACGTCGACAAGTTGATCACTAAGTTTTCAAGCTAA
AA sequence Show only first row Show all	>Lus10035273 pacid=23162559 polypeptide=Lus10035273 locus=Lus10035273.g ID=Lus10035273.BGIv1.0 annot-version=v1.0 MGCSFSGLNALYDAVNGGGDVWINDVRFRILRQLGEGGFAFVFLVKEVPADNSSAAGAGLAAKVKDKSHLSEDGAYAMKKVLIQNNEQLELNTQEGSWNN EAYLLFPVHLDGTLLDNSKAMSAKREFFSTSDVLEIFRQEWAAEHCSAPIRAPELWDCPSHADIDERTDVWSLGCTLYAIMYGVSPFEYALGESGGSLQL AVLNAQIKWPTGPKSAYPEALHQFVTWMLQPQATMRPRIDDIIIHVDKLITKFSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10035273 [exp]	0	1
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10034642 [exp]	1.0	0.9557
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10042528 [exp]	1.4	0.9382
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Lus10021681 [exp]	2.4	0.9343
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10000808 [exp]	4.9	0.9086
AT1G34130		STT3B	staurosporin and temperature s...		Lus10017990 [exp]	6.3	0.9266
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10004702 [exp]	7.9	0.9038
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10009165 [exp]	11.3	0.8049
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10017939 [exp]	11.4	0.9147
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10038146 [exp]	12.0	0.8900
AT1G30300			Metallo-hydrolase/oxidoreducta...		Lus10038519 [exp]	12.0	0.8891

Compare expression of checked genes

Lus10035273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.