Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16970 230 / 8e-73 AT-AER alkenal reductase (.1) AT1G65560 228 / 6e-72 Zinc-binding dehydrogenase family protein (.1) AT5G16990 223 / 3e-70 Zinc-binding dehydrogenase family protein (.1) AT3G03080 221 / 2e-69 Zinc-binding dehydrogenase family protein (.1) AT1G26320 220 / 7e-69 Zinc-binding dehydrogenase family protein (.1.2) AT5G17000 216 / 2e-67 Zinc-binding dehydrogenase family protein (.1) AT5G37980 213 / 4e-66 Zinc-binding dehydrogenase family protein (.1) AT5G37940 211 / 2e-65 Zinc-binding dehydrogenase family protein (.1) AT5G16960 208 / 2e-64 Zinc-binding dehydrogenase family protein (.1) AT5G38000 207 / 6e-64 Zinc-binding dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004380 [exp] 234 / 2e-74 AT5G37980 477 / 4e-170 Zinc-binding dehydrogenase family protein (.1) Lus10007832 [exp] 233 / 4e-74 AT5G16990 464 / 3e-165 Zinc-binding dehydrogenase family protein (.1) Lus10010989 [exp] 229 / 3e-72 AT5G16990 483 / 2e-172 Zinc-binding dehydrogenase family protein (.1) Lus10010988 [exp] 224 / 2e-70 AT5G16990 486 / 6e-174 Zinc-binding dehydrogenase family protein (.1) Lus10007853 [exp] 224 / 2e-70 AT5G16990 468 / 3e-166 Zinc-binding dehydrogenase family protein (.1) Lus10040177 [exp] 223 / 5e-70 AT5G37980 480 / 3e-171 Zinc-binding dehydrogenase family protein (.1) Lus10004379 [exp] 222 / 1e-69 AT5G17000 487 / 4e-174 Zinc-binding dehydrogenase family protein (.1) Lus10036289 [exp] 214 / 9e-67 AT5G16990 463 / 1e-164 Zinc-binding dehydrogenase family protein (.1) Lus10030087 [exp] 211 / 3e-65 AT5G16990 336 / 1e-114 Zinc-binding dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G006000 [exp] 241 / 3e-77 AT5G37980 493 / 2e-176 Zinc-binding dehydrogenase family protein (.1) Potri.017G005700 [exp] 242 / 5e-77 AT1G26320 496 / 1e-176 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G005400 [exp] 237 / 2e-75 AT5G37980 488 / 3e-174 Zinc-binding dehydrogenase family protein (.1) Potri.007G142400 [exp] 228 / 6e-72 AT5G16990 491 / 1e-175 Zinc-binding dehydrogenase family protein (.1) Potri.017G002300 [exp] 227 / 1e-71 AT1G26320 488 / 2e-174 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G143600 [exp] 224 / 2e-70 AT5G16970 501 / 1e-179 alkenal reductase (.1) Potri.007G143700 [exp] 223 / 5e-70 AT5G16970 495 / 2e-177 alkenal reductase (.1) Potri.017G004600 [exp] 220 / 1e-69 AT5G37980 419 / 7e-148 Zinc-binding dehydrogenase family protein (.1) Potri.017G004800 [exp] 220 / 2e-69 AT5G16970 409 / 8e-144 alkenal reductase (.1) Potri.007G143800 [exp] 221 / 4e-69 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10035274 pacid=23170586 polypeptide=Lus10035274 locus=Lus10035274.g ID=Lus10035274.BGIv1.0 annot-version=v1.0 ATGGGTAGCGCCGGCGTTGAGAACGTGGCGGGGGGGGGGGGGGGGCGGGGCGGGCGGGGGGAGGAAGAGGGTGGGGGGAGCGGCGTCAACGTGGCAGCCT ACTCACCACAAGGCATCCCAACCTCCGACCACTTGAAGCTCCGCCACGTCACAATTTCGGCGGACTCTGTCCCCGCAGGGCACATTTTGGTCCAAACCCT CTGGATCTCCGTCGACCCTTATTTACGTTCGATGATGACCGGTTCGGTCGATGGCCTCCACTTGCCCCAGTCCAAGCTCAATGAGATTTTGAAGACGTTC GGAGCAGTTAAAGTCATTCGTTCGGAGCACGAGGATTACAAAGCGGGCGACATCTTGATTAACCCTTTCCACCCCGTCGCTGATTACGCTGTGATTCCGA CCAATCCAGCTATAAGGAAGGTCGATCCATCTAGCCAAATTTCGTCCTTGGAACATCTCAATTGTCTCGGGATCCCTGGATTTGCGGCATGGGTGGGAAT AGTGAAACTAGGAGAAGCCAAAAGGGGGGACAATGTGTTCATATCGGCGGCCGCCGGAGGAGTTGGAATGTTGGCCGGCCAACTCGCCAAACTCAAGGGA TGCAGAGTCGTCGGAAGCACAGGATCCGATCACAAGGTGAAGCTTATTAAGGATGAATTCGGATACGACGATGCATTCAACTACAATAAAGAAACCGATT TCGACGTTGCTATGAGCAAATATTTTCCAAATGGGATTGATATCTACTTAGACAACGTCGGCGGCAGAATGTTGGAGGCTGTTCTAAACCATGTCAATCA CAAAGCAAGAGTTCTCCTTTGCGGCATGATCTCTCAATACAACAAGCCAAGGGAGGAGAGGGAAGGGGTGAGGAATTTGCTCAACATGATTGGTAAAGAA GTGAGGATGGAAGGGTTTCTCCTTGCTTCCTACCTCAATCATTTTGGAGACTTTGCGAAGGAGATCGAAGGCTATATTGTCGAAGGCAAGATTCGGTCCA AATACAAGGTTTACGACGGAATCGAAAGCTTTCTGAAAGGGTTTGGATCTGTTTTTTCGAGCGTCAATGACGGAAAAGTTGTCATCAAAGTTAATTAA
AA sequence Show only first row Show all	>Lus10035274 pacid=23170586 polypeptide=Lus10035274 locus=Lus10035274.g ID=Lus10035274.BGIv1.0 annot-version=v1.0 MGSAGVENVAGGGGGRGGRGEEEGGGSGVNVAAYSPQGIPTSDHLKLRHVTISADSVPAGHILVQTLWISVDPYLRSMMTGSVDGLHLPQSKLNEILKTF GAVKVIRSEHEDYKAGDILINPFHPVADYAVIPTNPAIRKVDPSSQISSLEHLNCLGIPGFAAWVGIVKLGEAKRGDNVFISAAAGGVGMLAGQLAKLKG CRVVGSTGSDHKVKLIKDEFGYDDAFNYNKETDFDVAMSKYFPNGIDIYLDNVGGRMLEAVLNHVNHKARVLLCGMISQYNKPREEREGVRNLLNMIGKE VRMEGFLLASYLNHFGDFAKEIEGYIVEGKIRSKYKVYDGIESFLKGFGSVFSSVNDGKVVIKVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16970		AT-AER	alkenal reductase (.1)		Lus10035274 [exp]	0	1
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10014285 [exp]	1.0	0.9471
AT4G24130			Protein of unknown function, D...		Lus10001674 [exp]	1.4	0.9457
AT2G37460			nodulin MtN21 /EamA-like trans...		Lus10007696 [exp]	2.0	0.9215
AT4G35160			O-methyltransferase family pro...		Lus10023987 [exp]	4.2	0.9299
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Lus10030872 [exp]	4.5	0.9208
AT5G48850		ATSDI1	SULPHUR DEFICIENCY-INDUCED 1, ...		Lus10011872 [exp]	4.7	0.8867
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10013936 [exp]	6.2	0.8666
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10005740 [exp]	9.6	0.8735
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10029607 [exp]	10.5	0.8247
					Lus10026442 [exp]	11.3	0.8512

Compare expression of checked genes

Lus10035274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.