Plant FIBer expression Database

Lus10035276 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G05140 169 / 2e-51 Peptidase M50 family protein (.1)
AT2G32480 154 / 9e-46 ARASP ARABIDOPSIS SERIN PROTEASE (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027190
[exp]
194 / 9e-65 AT1G05140 233 / 2e-76 Peptidase M50 family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G154000
[exp]
179 / 3e-55 AT2G32480 548 / 0.0 ARABIDOPSIS SERIN PROTEASE (.1.2)
Potri.002G228600
[exp]
171 / 6e-52 AT2G32480 564 / 0.0 ARABIDOPSIS SERIN PROTEASE (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0126 Peptidase_MA PF02163 Peptidase_M50 Peptidase family M50
Representative CDS sequence
>Lus10035276 pacid=23170678 polypeptide=Lus10035276 locus=Lus10035276.g ID=Lus10035276.BGIv1.0 annot-version=v1.0
ATGGTCGTAGCGAAGAATGTAATGGAAGCTTTCAGCTTTGCGGGGAGGGAGTTTACAGGGCTGAGTTATAATGTGGTTGATAGTTTGAGGCAGACGGTGA
TGAACTTCTCACAGACGGCGAGTAAAGTTGCCGGGCCGGTGGCGATCATCGCGGTGGGTGCGGAGGTGGCGAGGTCGAACGTGGACGGGGCTGAGGTAGC
GAGGTCGAACGTGGACGGACTGTATCAGTTCGCGGCGTTGCTGAATTTGAACTTGGCTGTGATAAATTTGCTGCCTTTGCCTGCTTTGGATGGAGGGTCT
TTGGCGTTAATACTGATCGAGGCGGCTAGAGGTGGGAGGAAGCTGCCGATGGAGCTCGAGCAGCGGATCATGTCGTCGGGGATTACGGTGGTTTTGCTTC
TGGGGTTGTTTCTTATTGTTAGGGATACTCTAAATCTGGATTTCATCAGGGAGATGTTGTGA
AA sequence
>Lus10035276 pacid=23170678 polypeptide=Lus10035276 locus=Lus10035276.g ID=Lus10035276.BGIv1.0 annot-version=v1.0
MVVAKNVMEAFSFAGREFTGLSYNVVDSLRQTVMNFSQTASKVAGPVAIIAVGAEVARSNVDGAEVARSNVDGLYQFAALLNLNLAVINLLPLPALDGGS
LALILIEAARGGRKLPMELEQRIMSSGITVVLLLGLFLIVRDTLNLDFIREML

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G05140 Peptidase M50 family protein (... Lus10035276
[exp]
0 1
AT2G34460 NAD(P)-binding Rossmann-fold s... Lus10040884
[exp]
1.7 0.8829
AT4G38970 FBA2 fructose-bisphosphate aldolase... Lus10031088
[exp]
4.2 0.9011
AT4G38970 FBA2 fructose-bisphosphate aldolase... Lus10035473
[exp]
9.6 0.9009
AT5G67360 ARA12 Subtilase family protein (.1) Lus10006307
[exp]
12.0 0.8458
AT2G23180 CYP96A1 "cytochrome P450, family 96, s... Lus10015307
[exp]
12.7 0.8424
AT3G09650 CRM3, HCF152 HIGH CHLOROPHYLL FLUORESCENCE ... Lus10023168
[exp]
13.2 0.8647
AT1G64500 Glutaredoxin family protein (.... Lus10003194
[exp]
13.3 0.8586
AT3G47300 SELT SELT-like protein precursor (.... Lus10002479
[exp]
14.8 0.8142
AT1G24110 Peroxidase superfamily protein... Lus10004234
[exp]
15.3 0.8322
AT2G01620 MEE11 maternal effect embryo arrest ... Lus10013466
[exp]
15.7 0.8610

Lus10035276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.