Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05950 255 / 2e-86 RmlC-like cupins superfamily protein (.1) AT5G39160 251 / 4e-85 RmlC-like cupins superfamily protein (.1.2.3) AT5G39190 251 / 7e-85 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39130 249 / 3e-84 RmlC-like cupins superfamily protein (.1) AT5G39110 248 / 8e-84 RmlC-like cupins superfamily protein (.1) AT5G39150 246 / 6e-83 RmlC-like cupins superfamily protein (.1) AT5G39120 246 / 7e-83 RmlC-like cupins superfamily protein (.1) AT5G39180 244 / 3e-82 RmlC-like cupins superfamily protein (.1) AT4G14630 240 / 2e-80 GLP9 germin-like protein 9 (.1) AT5G38940 235 / 1e-78 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030048 [exp] 392 / 1e-140 AT3G05950 249 / 3e-84 RmlC-like cupins superfamily protein (.1) Lus10026962 [exp] 389 / 2e-139 AT3G05950 251 / 6e-85 RmlC-like cupins superfamily protein (.1) Lus10035279 [exp] 382 / 1e-136 AT5G39160 244 / 2e-82 RmlC-like cupins superfamily protein (.1.2.3) Lus10034254 [exp] 371 / 3e-132 AT5G39160 251 / 6e-85 RmlC-like cupins superfamily protein (.1.2.3) Lus10029010 [exp] 367 / 7e-131 AT3G05950 250 / 2e-84 RmlC-like cupins superfamily protein (.1) Lus10030049 [exp] 348 / 8e-124 AT5G39160 191 / 8e-62 RmlC-like cupins superfamily protein (.1.2.3) Lus10032016 [exp] 338 / 1e-119 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10032015 [exp] 337 / 5e-119 AT5G39160 262 / 3e-89 RmlC-like cupins superfamily protein (.1.2.3) Lus10035185 [exp] 332 / 4e-117 AT5G39160 265 / 2e-90 RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G163200 [exp] 321 / 1e-112 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.011G162932 [exp] 321 / 1e-112 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163800 [exp] 317 / 6e-111 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.011G163216 [exp] 314 / 5e-110 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163300 [exp] 314 / 7e-110 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G162200 [exp] 306 / 1e-106 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G465100 [exp] 301 / 1e-104 AT5G39160 253 / 8e-86 RmlC-like cupins superfamily protein (.1.2.3) Potri.001G464000 [exp] 294 / 7e-102 AT5G39190 231 / 4e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G464100 [exp] 292 / 3e-101 AT5G39190 231 / 3e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.013G052000 [exp] 269 / 5e-92 AT5G39110 282 / 5e-97 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10035278 pacid=23170483 polypeptide=Lus10035278 locus=Lus10035278.g ID=Lus10035278.BGIv1.0 annot-version=v1.0 ATGGCGAATCAAGCTGTTATGATGGTGACCTTCTTGCTAGGAATAGCTCTCACTTCCTGCTATCTCGCCTCTGCCTCCGATCCTTCGCCCCTTCAGGACT TCTGCGTCGCAGATTCGAGCAATCAAGTGAAAATAAACGGATTTGCTTGCAAGGATCCTTCGACGGTCCAGGCGAGCGATTTCTCCATCAGCGGGCTCCA CAACCCTGGGAACACAGCCAATGCAGTGGGATCTGTCGTGACCCCGGTGACGGTGGCTCAGATTCCCGGGCTCAACACCTTGGGAATCTCGATGGTGCGT ATCGACTATGCTCCTTGGGGAATTGGCTCTCCTCACACTCATCCACGGGCCACTGAGGTTCTGACGGTCATCGAGGGCACTTTGGAAGTTGGATTCGTCA CGTCGAATCCCGAGAATCGTCTCATTTCCAAAGTCCTTCAGAAGGGTGACGTGTTTGTGTTTCCGATTGGTTTGGTTCACTTCCAGCGCAATGTTGGATA TGGGAATGCAGTGGCTATTGCCGCCTTGAGCAGTCAGAACCCCGGAGTTATTACTGTCGCCAACTCTGTGTTCGGATCGAAACCTGACATCGCCACCGAC ATTCTTGCCAAGGCGTTCCAGGTCGACCAGAGCACTATTCAACAAATCCAGTCGAAATTCTAG
AA sequence Show only first row Show all	>Lus10035278 pacid=23170483 polypeptide=Lus10035278 locus=Lus10035278.g ID=Lus10035278.BGIv1.0 annot-version=v1.0 MANQAVMMVTFLLGIALTSCYLASASDPSPLQDFCVADSSNQVKINGFACKDPSTVQASDFSISGLHNPGNTANAVGSVVTPVTVAQIPGLNTLGISMVR IDYAPWGIGSPHTHPRATEVLTVIEGTLEVGFVTSNPENRLISKVLQKGDVFVFPIGLVHFQRNVGYGNAVAIAALSSQNPGVITVANSVFGSKPDIATD ILAKAFQVDQSTIQQIQSKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05950			RmlC-like cupins superfamily p...		Lus10035278 [exp]	0	1
					Lus10022893 [exp]	1.4	0.8577
AT1G72490			unknown protein		Lus10013160 [exp]	2.0	0.8531
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10008706 [exp]	2.4	0.8467
AT5G52790			CBS domain-containing protein ...		Lus10027528 [exp]	5.2	0.7526
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10033173 [exp]	8.7	0.7047
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10038312 [exp]	8.9	0.8195
					Lus10018751 [exp]	12.8	0.7291
AT5G17630			Nucleotide/sugar transporter f...		Lus10004312 [exp]	14.5	0.7411
AT5G02070			Protein kinase family protein ...		Lus10020667 [exp]	14.7	0.7646
AT1G23540		IGI1, AtPERK12	proline-rich extensin-like rec...		Lus10013014 [exp]	18.4	0.7098

Compare expression of checked genes

Lus10035278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.