Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05950 252 / 3e-85 RmlC-like cupins superfamily protein (.1) AT5G39190 247 / 2e-83 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39160 246 / 4e-83 RmlC-like cupins superfamily protein (.1.2.3) AT5G39130 246 / 5e-83 RmlC-like cupins superfamily protein (.1) AT5G39110 235 / 1e-78 RmlC-like cupins superfamily protein (.1) AT5G39150 232 / 2e-77 RmlC-like cupins superfamily protein (.1) AT5G39120 231 / 5e-77 RmlC-like cupins superfamily protein (.1) AT5G39180 230 / 7e-77 RmlC-like cupins superfamily protein (.1) AT3G04200 228 / 1e-75 RmlC-like cupins superfamily protein (.1) AT5G38910 228 / 1e-75 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030047 [exp] 420 / 1e-151 AT3G05950 256 / 7e-87 RmlC-like cupins superfamily protein (.1) Lus10032016 [exp] 355 / 4e-126 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10032015 [exp] 353 / 2e-125 AT5G39160 262 / 3e-89 RmlC-like cupins superfamily protein (.1.2.3) Lus10035185 [exp] 352 / 1e-124 AT5G39160 265 / 2e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10035186 [exp] 346 / 2e-122 AT5G39190 265 / 2e-90 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Lus10032017 [exp] 330 / 7e-115 AT3G05950 252 / 5e-84 RmlC-like cupins superfamily protein (.1) Lus10030048 [exp] 321 / 1e-112 AT3G05950 249 / 3e-84 RmlC-like cupins superfamily protein (.1) Lus10035278 [exp] 318 / 2e-111 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1) Lus10026962 [exp] 315 / 4e-110 AT3G05950 251 / 6e-85 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G163200 [exp] 305 / 2e-106 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.011G162932 [exp] 305 / 2e-106 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163800 [exp] 302 / 3e-105 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.011G163216 [exp] 292 / 3e-101 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163300 [exp] 291 / 6e-101 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.001G465100 [exp] 285 / 1e-98 AT5G39160 253 / 8e-86 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G162200 [exp] 277 / 2e-95 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G464100 [exp] 275 / 1e-94 AT5G39190 231 / 3e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G464000 [exp] 266 / 3e-91 AT5G39190 231 / 4e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.013G052000 [exp] 254 / 3e-86 AT5G39110 282 / 5e-97 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10035280 pacid=23170527 polypeptide=Lus10035280 locus=Lus10035280.g ID=Lus10035280.BGIv1.0 annot-version=v1.0 ATGGAAAATCGGGTAGCTTTCATATCCTTGTTCATCGTGGCGGTTTGTTCAAGCCTAGCATCTGCAATGGATCCTGCCAATCTCCAGGATTTTTGTGTGG CCGATACTAATGCCAACGTGATGATGAACGGTTTCGCATGTAAGAATCCGGCTACGGTTCAAGCAAGTGATTTCTCCTTGAGCGGGTTCCACATCCCCGG GAACATCTCGAATGCGTTGGGGTCGAAGATTACCCCTGCTATGGTGGCTCAGATTCCAGGTCTGAACACTTTGGGAATCTCGTTGGTCCGCATTGATTTT GCTCCTTGGGGTGTTAACCCTCCCCACACGCATCCTCGTGCCACTGAGATTCTCATTGTCATCGAGGGGTCGTTGGAGGCTGGATTCCTCACTTCGAACC CTGAGAACCGTTTGATTTCCAAGGTCCTTCACAAAGGCGATGTGTTTGTCTTTCCGATTGGGTTGATCCACTACCAGCGTAATGTTGGGAACGAAAATGC GGTGGCCATTGCCGGATTGAACAGTCAGAACCCTGGAGTCATCGGCATTGCCAACTCTGTTTTCGGCTCGAAGCCGGACATCTCAGATGGCATGCTTGCT AAGGCTTTTCAAGTTGACAAACTTGTGGTGGAGCAGCTCAAAGCCAAGTTCTAA
AA sequence Show only first row Show all	>Lus10035280 pacid=23170527 polypeptide=Lus10035280 locus=Lus10035280.g ID=Lus10035280.BGIv1.0 annot-version=v1.0 MENRVAFISLFIVAVCSSLASAMDPANLQDFCVADTNANVMMNGFACKNPATVQASDFSLSGFHIPGNISNALGSKITPAMVAQIPGLNTLGISLVRIDF APWGVNPPHTHPRATEILIVIEGSLEAGFLTSNPENRLISKVLHKGDVFVFPIGLIHYQRNVGNENAVAIAGLNSQNPGVIGIANSVFGSKPDISDGMLA KAFQVDKLVVEQLKAKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05950			RmlC-like cupins superfamily p...		Lus10035280 [exp]	0	1
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10013268 [exp]	1.0	1.0000
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10003345 [exp]	2.4	1.0000
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10003585 [exp]	3.0	1.0000
AT4G21690		ATGA3OX3	ARABIDOPSIS THALIANA GIBBERELL...		Lus10013134 [exp]	3.7	0.9738
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Lus10005476 [exp]	4.0	0.9848
AT5G51490			Plant invertase/pectin methyle...		Lus10027204 [exp]	4.2	0.8969
					Lus10014650 [exp]	5.0	0.9806
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010799 [exp]	5.5	0.8619
					Lus10027457 [exp]	6.0	0.9787
AT5G03050			unknown protein		Lus10030557 [exp]	6.5	0.8127

Compare expression of checked genes

Lus10035280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.