Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04090 166 / 6e-51 SIP1A, SIP1;1 small and basic intrinsic protein 1A (.1) AT5G18290 160 / 2e-48 SIP1B, SIP1;2 SMALL AND BASIC INTRINSIC PROTEIN 1B, Aquaporin-like superfamily protein (.1.2) AT3G56950 79 / 2e-17 SIP2;1, SIP2 small and basic intrinsic protein 2;1 (.1.2) AT2G16850 50 / 5e-07 PIP3B, PIP2;8 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) AT2G25810 49 / 8e-07 TIP4;1 tonoplast intrinsic protein 4;1 (.1) AT1G73190 48 / 2e-06 ALPHA-TIP, TIP3;1 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) AT1G17810 47 / 5e-06 BETA-TIP beta-tonoplast intrinsic protein (.1) AT2G37170 47 / 6e-06 PIP2;2, PIP2B PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) AT3G26520 46 / 7e-06 TIP1;2, SITIP, GAMMA-TIP2, TIP2 SALT-STRESS INDUCIBLE TONOPLAST INTRINSIC PROTEIN, tonoplast intrinsic protein 2 (.1) AT4G01470 46 / 9e-06 ATTIP1.3, GAMMA-TIP3, TIP1;3 tonoplast intrinsic protein 1;3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030046 [exp] 408 / 4e-146 AT3G04090 172 / 2e-53 small and basic intrinsic protein 1A (.1) Lus10021989 [exp] 159 / 3e-44 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038989 [exp] 96 / 8e-24 AT3G56950 248 / 5e-83 small and basic intrinsic protein 2;1 (.1.2) Lus10027275 [exp] 91 / 7e-22 AT3G56950 249 / 2e-83 small and basic intrinsic protein 2;1 (.1.2) Lus10035395 [exp] 89 / 7e-20 AT5G05070 463 / 1e-158 DHHC-type zinc finger family protein (.1) Lus10030997 [exp] 82 / 1e-17 AT3G56930 332 / 1e-107 DHHC-type zinc finger family protein (.1.2) Lus10021510 [exp] 49 / 9e-07 AT2G36830 402 / 9e-144 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10040863 [exp] 49 / 9e-07 AT4G01470 394 / 2e-140 tonoplast intrinsic protein 1;3 (.1) Lus10022611 [exp] 49 / 9e-07 AT2G36830 403 / 5e-144 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G227500 [exp] 265 / 9e-90 AT5G18290 165 / 2e-50 SMALL AND BASIC INTRINSIC PROTEIN 1B, Aquaporin-like superfamily protein (.1.2) Potri.014G154400 [exp] 263 / 3e-89 AT5G18290 183 / 2e-57 SMALL AND BASIC INTRINSIC PROTEIN 1B, Aquaporin-like superfamily protein (.1.2) Potri.013G053400 [exp] 210 / 2e-68 AT3G04090 224 / 6e-74 small and basic intrinsic protein 1A (.1) Potri.019G030900 [exp] 203 / 1e-65 AT3G04090 236 / 3e-78 small and basic intrinsic protein 1A (.1) Potri.016G024900 [exp] 95 / 2e-23 AT3G56950 303 / 1e-104 small and basic intrinsic protein 2;1 (.1.2) Potri.006G027200 [exp] 92 / 2e-22 AT3G56950 264 / 1e-89 small and basic intrinsic protein 2;1 (.1.2) Potri.001G235300 [exp] 51 / 2e-07 AT4G01470 375 / 8e-133 tonoplast intrinsic protein 1;3 (.1) Potri.009G027200 [exp] 50 / 3e-07 AT4G01470 367 / 7e-130 tonoplast intrinsic protein 1;3 (.1) Potri.003G108500 [exp] 48 / 2e-06 AT3G47440 320 / 5e-111 tonoplast intrinsic protein 5;1 (.1) Potri.010G209900 [exp] 47 / 3e-06 AT4G01470 389 / 2e-138 tonoplast intrinsic protein 1;3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10035281 pacid=23170493 polypeptide=Lus10035281 locus=Lus10035281.g ID=Lus10035281.BGIv1.0 annot-version=v1.0 ATGGGGCTAATTAAGTCAGCAACCGGAGACTTCATCCTGACCTCGATGTGGGTCTTCTCCGTCCCACTCCTCATAATCTCCTCCGCAACCGTCTCCTCCT CCCTCGGCCTCGAACCAAAATCCCTAGCCTCCCTCTTCATCACCGTCAACGTCGCCGCCGTCTTCGTCCTCTTCTTCTCCACAATCGGCGCCCTCCTCGG CGGCGCGGCCTTCAACCCAACCACCACCGTCACCTTCTACGCTGCTGGCCTCAAACCTGACCTCTCCCTCATCTCCCTCGCCGCCCGGTTCCCGATCCAG GCCGCCGCCGGCGTACTCGGCGCCAAAGCGATCAGACAAATCCTCCTCCCGACGAGGTTCCGCCACGTCATCGGAGGGCCGTCGTTGAAAGTGGATCCGC ACACCGGCGCAGCTGCCGAAGCAGGTTTGAGCTTCCTGCTCTGTTTATCTCTGCTTTCGATTATGGTCAAAGGTCCGAGGAATTCCCTGGTCAAAGTCTG GATGCTGGCCGTGGTGACCGTTGGATTGATCTTCGCCGGAGGGAAGTTCACCGGTCCGTCTATGAACCCTGCGAATGCTTACGGATGGGCTTATGTGAAC GATCGGCATCAGAATTGGGATTTGTTCTATGTCTACTGGGTGTCTCCCATCATTGGCGCCATTGTTGCAGCTTCAGTGTTCAAGCTCGTGTTCAAGAGTT CTCTTCCTCCGCCTTCCAAGCCCAAGGCCGAGTGA
AA sequence Show only first row Show all	>Lus10035281 pacid=23170493 polypeptide=Lus10035281 locus=Lus10035281.g ID=Lus10035281.BGIv1.0 annot-version=v1.0 MGLIKSATGDFILTSMWVFSVPLLIISSATVSSSLGLEPKSLASLFITVNVAAVFVLFFSTIGALLGGAAFNPTTTVTFYAAGLKPDLSLISLAARFPIQ AAAGVLGAKAIRQILLPTRFRHVIGGPSLKVDPHTGAAAEAGLSFLLCLSLLSIMVKGPRNSLVKVWMLAVVTVGLIFAGGKFTGPSMNPANAYGWAYVN DRHQNWDLFYVYWVSPIIGAIVAASVFKLVFKSSLPPPSKPKAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04090		SIP1A, SIP1;1	small and basic intrinsic prot...		Lus10035281 [exp]	0	1
AT3G04090		SIP1A, SIP1;1	small and basic intrinsic prot...		Lus10030046 [exp]	10.0	0.8435
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Lus10023792 [exp]	10.9	0.8018
AT2G30920		ATCOQ3, EMB3002	embryo defective 3002, coenzym...		Lus10033512 [exp]	11.8	0.7670
AT4G39840			unknown protein		Lus10041688 [exp]	13.3	0.8195
AT4G22550			Phosphatidic acid phosphatase ...		Lus10004345 [exp]	17.8	0.8181
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10033859 [exp]	18.8	0.7193
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10010665 [exp]	20.0	0.6998
AT1G78510		SPS1	solanesyl diphosphate synthase...		Lus10013703 [exp]	21.8	0.7640
AT4G16563			Eukaryotic aspartyl protease f...		Lus10008513 [exp]	23.2	0.7461
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Lus10003967 [exp]	24.2	0.8026

Compare expression of checked genes

Lus10035281 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.