Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42570 179 / 4e-57 B-cell receptor-associated 31-like (.1) AT1G11905 139 / 1e-41 B-cell receptor-associated protein 31-like (.1.2) AT5G48660 99 / 6e-26 B-cell receptor-associated protein 31-like (.1) AT3G07190 91 / 1e-22 B-cell receptor-associated protein 31-like (.1) AT3G20450 85 / 3e-21 B-cell receptor-associated protein 31-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030043 [exp] 271 / 7e-94 AT5G42570 241 / 1e-81 B-cell receptor-associated 31-like (.1) Lus10031546 [exp] 197 / 4e-64 AT5G42570 287 / 3e-99 B-cell receptor-associated 31-like (.1) Lus10015132 [exp] 171 / 5e-54 AT5G42570 258 / 7e-88 B-cell receptor-associated 31-like (.1) Lus10020025 [exp] 143 / 6e-43 AT1G11905 225 / 9e-75 B-cell receptor-associated protein 31-like (.1.2) Lus10011842 [exp] 99 / 6e-26 AT5G48660 270 / 1e-92 B-cell receptor-associated protein 31-like (.1) Lus10022777 [exp] 94 / 6e-24 AT5G48660 271 / 9e-93 B-cell receptor-associated protein 31-like (.1) Lus10038188 [exp] 91 / 8e-23 AT3G07190 265 / 1e-90 B-cell receptor-associated protein 31-like (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G007900 [exp] 170 / 2e-53 AT5G42570 259 / 3e-88 B-cell receptor-associated 31-like (.1) Potri.011G007200 [exp] 166 / 5e-52 AT5G42570 278 / 1e-95 B-cell receptor-associated 31-like (.1) Potri.014G154800 [exp] 133 / 4e-39 AT5G42570 152 / 2e-46 B-cell receptor-associated 31-like (.1) Potri.014G191500 [exp] 114 / 1e-31 AT5G48660 237 / 2e-79 B-cell receptor-associated protein 31-like (.1) Potri.011G089100 [exp] 110 / 2e-31 AT5G42570 140 / 5e-43 B-cell receptor-associated 31-like (.1) Potri.002G245300 [exp] 106 / 7e-29 AT3G07190 239 / 3e-80 B-cell receptor-associated protein 31-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05529 [flax] [poplar] Bap31 Bap31/Bap29 transmembrane region
Representative CDS sequence Show only first row Show all	>Lus10035283 pacid=23170655 polypeptide=Lus10035283 locus=Lus10035283.g ID=Lus10035283.BGIv1.0 annot-version=v1.0 ATGATACAGCTTCTCTACGGGGTGATCTTCGGCCAGATGGTGCTGATCCTGTTGTTGCTGTTCAAGACGCCGCTGCGGAAGCTGGTGATCATGGCCTTGG ATCGGCTCAAGCGGGGGAGAGGCCCCATAGTTGTGAAAACTGTCGCCGGAACGCTCCTGCTCGTCCTTTCCTCCAGCCTTTACAGTATGTTCACGATTCA GAATCGCTCCATTGAGGCCGGCGCTCCCAATCCTACCGACCAGGTCCTCATGTCCCGGCACCTCCTCGAAGCGTCTCTTATGGGGTTCGTGCTGTTCCTT TCACTGATGATCGACAGGCTACACCATTACATCAGGGAGCTTCGCCAGCTAAGGAAGACAATGGAGACCGCCAAGAAACAAACTCGAGGAGTAGACGATG CCAAAACCAGCAGCAGCAGCAGCAATTCAGACGAGATGAAAGCACTCGAAGAAGAAGCTGCTGCTCTACGCAGTAAGGTGAAGCAACTGGAAGCCGAATG TGAAGCCAAGAACAAGGAAATCAAGGCTGCAGAAGATATATTCGAGCCCAAGAAGGACATGTAG
AA sequence Show only first row Show all	>Lus10035283 pacid=23170655 polypeptide=Lus10035283 locus=Lus10035283.g ID=Lus10035283.BGIv1.0 annot-version=v1.0 MIQLLYGVIFGQMVLILLLLFKTPLRKLVIMALDRLKRGRGPIVVKTVAGTLLLVLSSSLYSMFTIQNRSIEAGAPNPTDQVLMSRHLLEASLMGFVLFL SLMIDRLHHYIRELRQLRKTMETAKKQTRGVDDAKTSSSSSNSDEMKALEEEAAALRSKVKQLEAECEAKNKEIKAAEDIFEPKKDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42570			B-cell receptor-associated 31-...		Lus10035283 [exp]	0	1
AT2G25250			unknown protein		Lus10041025 [exp]	2.8	0.9014
					Lus10018622 [exp]	4.0	0.8661
AT5G13860		ELC-LIKE, ATELC...	ELCH-like (.1)		Lus10041612 [exp]	8.1	0.8555
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10019526 [exp]	12.8	0.8520
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10014758 [exp]	13.2	0.8489
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10016801 [exp]	15.2	0.8379
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10012224 [exp]	17.5	0.8291
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10022497 [exp]	18.2	0.8330
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Lus10009270 [exp]	20.1	0.8458
AT5G11070			unknown protein		Lus10001943 [exp]	20.8	0.8313

Compare expression of checked genes

Lus10035283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.