Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32510 316 / 3e-105 MAPKKK17 mitogen-activated protein kinase kinase kinase 17 (.1) AT1G05100 304 / 7e-101 MAPKKK18 mitogen-activated protein kinase kinase kinase 18 (.1) AT5G55090 288 / 2e-93 MAPKKK15 mitogen-activated protein kinase kinase kinase 15 (.1) AT4G26890 263 / 1e-83 MAPKKK16 mitogen-activated protein kinase kinase kinase 16 (.1) AT1G07150 206 / 4e-61 MAPKKK13 mitogen-activated protein kinase kinase kinase 13 (.1.2) AT2G30040 191 / 9e-56 MAPKKK14 mitogen-activated protein kinase kinase kinase 14 (.1) AT4G36950 178 / 3e-52 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 (.1) AT1G54960 181 / 3e-51 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT5G67080 175 / 5e-51 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1) AT1G09000 181 / 1e-50 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030042 [exp] 683 / 0 AT2G32510 324 / 2e-108 mitogen-activated protein kinase kinase kinase 17 (.1) Lus10031544 [exp] 358 / 3e-119 AT1G05100 298 / 3e-97 mitogen-activated protein kinase kinase kinase 18 (.1) Lus10021551 [exp] 264 / 3e-83 AT5G55090 326 / 7e-107 mitogen-activated protein kinase kinase kinase 15 (.1) Lus10022951 [exp] 259 / 4e-82 AT4G26890 325 / 3e-107 mitogen-activated protein kinase kinase kinase 16 (.1) Lus10012668 [exp] 172 / 9e-50 AT3G50310 347 / 5e-119 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034060 [exp] 177 / 2e-49 AT3G06030 730 / 0.0 NPK1-related protein kinase 3 (.1) Lus10010519 [exp] 177 / 2e-49 AT3G06030 726 / 0.0 NPK1-related protein kinase 3 (.1) Lus10015185 [exp] 174 / 2e-48 AT1G09000 692 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Lus10014976 [exp] 174 / 2e-47 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G228200 [exp] 345 / 3e-116 AT2G32510 321 / 2e-107 mitogen-activated protein kinase kinase kinase 17 (.1) Potri.014G155000 [exp] 343 / 3e-116 AT1G05100 317 / 3e-107 mitogen-activated protein kinase kinase kinase 18 (.1) Potri.011G007400 [exp] 312 / 4e-102 AT5G55090 326 / 3e-107 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.004G007700 [exp] 296 / 3e-96 AT5G55090 321 / 2e-105 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.001G278600 [exp] 219 / 2e-66 AT1G07150 353 / 2e-117 mitogen-activated protein kinase kinase kinase 13 (.1.2) Potri.009G073200 [exp] 219 / 3e-66 AT1G07150 360 / 9e-120 mitogen-activated protein kinase kinase kinase 13 (.1.2) Potri.003G130000 [exp] 210 / 2e-64 AT5G55090 232 / 2e-72 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.005G139300 [exp] 189 / 2e-56 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139200 [exp] 189 / 2e-56 AT5G67080 305 / 2e-102 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.007G044800 [exp] 189 / 4e-56 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10035284 pacid=23170545 polypeptide=Lus10035284 locus=Lus10035284.g ID=Lus10035284.BGIv1.0 annot-version=v1.0 ATGAGCTGGACTCGAGGTCACAAACTTGGCCACGGCTCCACCGCCACCGTCTACTTGGCAACCGCCCACCGCTCCGGCGAAAAATTCGCTGTCAAGTCAG CCGAGCTCTCCCACTCGGAATTCCTCCAGAGAGAACAGAGGATTCTCTCTTCAATCTCATCTCCTTACATAATCGGATACAGAGGATGCGAAATTAAAAA CGAGGACGACAACGACGGCGGAAAAGTTTTCTACAATCTGTTGCTCGACTACATCCCCGGCGGGACGATCATCGATGAGATTCACCGGCGGGGAGTCATC GGCGCCCGGATGGGAGAGTCGACGATAAGATCCTACACGTGGCATATCGTCAAGGCGATTGAGTATCTACATTCCAACGGAATTGTGCATTGCGATGTTA AAGGTAGGAATATTCTGGTCGGACCGGGTGAATCCGCCAAGCTCGCGGATTTTGGATGCTCGAAGCCGGTCGGGTCGACGGCGGTAATTGGCGGGACGCC GATGTTTATGGCGCCGGAGGCGGCGCGTGGGGAGGAGCAGGGGTTCGCTGGAGACGTATGGGGACTGGGTTGCGCGGTGATCGAAATGGCGACCGGCGGC TGTTCGCCGTGGACGGAAACGGACGTTTCCGACGACCCAGTTTCAGCGATTTACCGGGTGGGCTACTCGGACCGTGTACCGGAGTTTCCGGGTTGGTTTT CGGAGCAAGGAAAGGATTTCTTGGATAAGTGTCTAAAGAGGGATTCGAATCAGAGGTGGACGGCAAGTCAGCTCCTGAATCATCCATTTCTGGCGAAGTT CAACAATTCGAGACAGGAATCTCCGGAATCTTTGGCAAAGATTCCGTCCTTCGATTCTCCGACGAGCATTCTGGATAACGGGTTCTGGAATTCGGTGGTT TCGGACTCCGAGGAAGCTTCTTCTTCTTCATCATCATCATCATCGGAGGAAGAAGAAGAAGATGAAGCAGAGGCGAGAGGGAGGATCGGACGGCTGGGGA TGGAGACTTTTGTGGGGCCCAGTTGGGATGAGGATGGTTGTGGCTGTTGGATCACGGTGAGGGAGAATGGTGAAGAAGAGGATTGTGTAGTGGAGTCGTC ATTAGAGAGTGATTACAGTGTAATTAGTAGAAGTGTAGGGGCTAGTTTGGGAGGTTGTAAATATGAGAGAATTGGTAGTTTTGGAGGAGTTAGTTGTAAT TTGGGGTTTAAGAGGGTGAGGCAAGATGGAGATGTATCATCATCATTGTCACTAATTCCTTCACAAGCTTAG
AA sequence Show only first row Show all	>Lus10035284 pacid=23170545 polypeptide=Lus10035284 locus=Lus10035284.g ID=Lus10035284.BGIv1.0 annot-version=v1.0 MSWTRGHKLGHGSTATVYLATAHRSGEKFAVKSAELSHSEFLQREQRILSSISSPYIIGYRGCEIKNEDDNDGGKVFYNLLLDYIPGGTIIDEIHRRGVI GARMGESTIRSYTWHIVKAIEYLHSNGIVHCDVKGRNILVGPGESAKLADFGCSKPVGSTAVIGGTPMFMAPEAARGEEQGFAGDVWGLGCAVIEMATGG CSPWTETDVSDDPVSAIYRVGYSDRVPEFPGWFSEQGKDFLDKCLKRDSNQRWTASQLLNHPFLAKFNNSRQESPESLAKIPSFDSPTSILDNGFWNSVV SDSEEASSSSSSSSSEEEEEDEAEARGRIGRLGMETFVGPSWDEDGCGCWITVRENGEEEDCVVESSLESDYSVISRSVGASLGGCKYERIGSFGGVSCN LGFKRVRQDGDVSSSLSLIPSQA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32510		MAPKKK17	mitogen-activated protein kina...		Lus10035284 [exp]	0	1
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10003217 [exp]	1.0	0.8655
AT3G24535			unknown protein		Lus10023639 [exp]	1.4	0.8510
AT5G55090		MAPKKK15	mitogen-activated protein kina...		Lus10021551 [exp]	2.0	0.8384
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Lus10034544 [exp]	5.7	0.8186
AT1G23390			Kelch repeat-containing F-box ...		Lus10029127 [exp]	9.8	0.8436
AT3G48660			Protein of unknown function (D...		Lus10015769 [exp]	10.2	0.8043
AT3G48660			Protein of unknown function (D...		Lus10037036 [exp]	13.9	0.8320
AT1G27300			unknown protein		Lus10015771 [exp]	14.2	0.8187
AT1G52330			Late embryogenesis abundant (L...		Lus10037534 [exp]	16.6	0.8359
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10022199 [exp]	17.7	0.8183

Compare expression of checked genes

Lus10035284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.