Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11910 551 / 0 ATAPA1, APA1 aspartic proteinase A1 (.1) AT1G62290 541 / 0 Saposin-like aspartyl protease family protein (.1.2) AT4G04460 528 / 0 Saposin-like aspartyl protease family protein (.1.2) AT1G69100 139 / 1e-36 Eukaryotic aspartyl protease family protein (.1) AT4G22050 132 / 2e-34 Eukaryotic aspartyl protease family protein (.1) AT3G20015 45 / 6e-05 Eukaryotic aspartyl protease family protein (.1) AT3G12700 42 / 0.0005 Eukaryotic aspartyl protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030041 [exp] 764 / 0 AT1G11910 535 / 0.0 aspartic proteinase A1 (.1) Lus10021552 [exp] 553 / 0 AT1G11910 782 / 0.0 aspartic proteinase A1 (.1) Lus10020024 [exp] 551 / 0 AT1G11910 762 / 0.0 aspartic proteinase A1 (.1) Lus10022957 [exp] 551 / 0 AT1G11910 791 / 0.0 aspartic proteinase A1 (.1) Lus10032636 [exp] 533 / 0 AT1G11910 735 / 0.0 aspartic proteinase A1 (.1) Lus10015547 [exp] 530 / 0 AT1G11910 742 / 0.0 aspartic proteinase A1 (.1) Lus10043112 [exp] 470 / 6e-164 AT1G11910 639 / 0.0 aspartic proteinase A1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G356900 [exp] 573 / 0 AT1G11910 800 / 0.0 aspartic proteinase A1 (.1) Potri.011G007600 [exp] 558 / 0 AT1G11910 721 / 0.0 aspartic proteinase A1 (.1) Potri.004G007600 [exp] 551 / 0 AT1G11910 779 / 0.0 aspartic proteinase A1 (.1) Potri.013G002200 [exp] 503 / 2e-175 AT1G11910 622 / 0.0 aspartic proteinase A1 (.1) Potri.002G228300 [exp] 474 / 3e-164 AT1G11910 604 / 0.0 aspartic proteinase A1 (.1) Potri.005G002800 [exp] 456 / 3e-158 AT1G11910 604 / 0.0 aspartic proteinase A1 (.1) Potri.010G003400 [exp] 440 / 3e-151 AT1G62290 548 / 0.0 Saposin-like aspartyl protease family protein (.1.2) Potri.007G106300 [exp] 44 / 0.0003 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease CL0129 [flax] [poplar] PF03489 [flax] [poplar] SapB_2 Saposin-like type B, region 2 CL0129 [flax] [poplar] PF05184 [flax] [poplar] SapB_1 Saposin-like type B, region 1
Representative CDS sequence Show only first row Show all	>Lus10035285 pacid=23170677 polypeptide=Lus10035285 locus=Lus10035285.g ID=Lus10035285.BGIv1.0 annot-version=v1.0 ATGGGTACTGAACTAAAATCAGCTTGGATGATCCTCCTCTTTCTATTCATCCTCCCGGCGATGATTCCCGGCAGCAACGGCCAACTCGTGAGAATCCCGG TGAAAAAGCGGAAGCTGGATAATCAACTCACTCCACCAGCGGCGAAGAAGTACCAACTTGGAAACGACGTCGTTGTGGACCTGAACAACTACTTGGACGC ACAGTACTACGGCGAGATTGGAGTTGGGTCTCCTCCCCAGACATTCAAAGTAGTGTTCGACACTGGAAGTTCGAATCTTTGGGTTCCTTCTGTGAAGTGC CACTTGTCTCTTGCTTGCTTTATCCATTCCAGATACAAGTCCAGTCGTTCCAGCTCGTACAACAAGAACGGTACCTCTGCTAAAATCAGCTATGGAAGTG GTTCAGTCTCCGGATTCTTTAGCCAGGACAGTGTCACAGTTGGGGATATTGTTGTGGAGAATCAGGATTTCATCGAGGCAACAAAAGAGCCAATCGCCAC GTTCCTGGCTGCAAAGTTCGATGGCATCCTCGGGCTTGGATTCCAGGAATTCTCGGTTGAAAATGCTGTTCCCCTTTGGTACAACATGGTCAATCAAGAC CTCGTGAAAGACCCGATATTTTCGTTCTGGTTGAACCGAAATGCTGAAGGCGAGGAAGGAGGAGAGATTGTGTTTGGTGGAGTTGATTCTGATCATTACA AGGGGAAGCATACTTTTGTTCCTCTTACTCAAAAGGGCTATTGGCAGTTTGATATCGGTGATGTGTGGATAGGAAATCAATCTGTTTCAGGAAACTGTGC CGGTTCCTGCAGTGCAATTGCTGATTCCGGGACTTCGATGTTGGCTGGTCCAACGTCCGTGATCGCTGAGATCAATCATGTGATTGGGGCGACCGGCACT GTAAGCCAAGAATGCAAGTCAGTAGTGTCACTCTATGGCAGAACCATACTTGAATTGCTACTAGCTGATGTACTGCCACATGAAATCTGTTCTCAGATAG GAATCTGCTTAGTGGATGGGAATTACAGTGTCAGTATGGACATAAAGAGCGTAGTGGACAAGACGAAAACCGATGGCTTGGACAACGCGCTGTGCACTGC TTGCGAGATGGCAGTCGTGTGGATTGAGAACCGGCTCAAACTAAATGAAACTGCTGAACAGATTCTTAAATACATTGACGAGGCAAATGCACAGTCGACT GTCGAATGTAGCAGTATCCCTTCGTTGCCTGTCGTCTCGTTCACCATCGGTGGCAAGGACTTTGACCTTGCTCCTGAAGAGTACATCCTTAAAGTAGGGA ATGGAATTACAGCTCAATGTATCAGCGGGTTCTCTGCTTTCGACGTGCCTCCTCCTCGCGGCCCTCTATGGGTTCTGGGAGATGTTTTCATGGGACGTTA CCACACCGTGTTTGACTACGAAAACTTGAAAATTGGATTCGCTTTAGCCGCTTAG
AA sequence Show only first row Show all	>Lus10035285 pacid=23170677 polypeptide=Lus10035285 locus=Lus10035285.g ID=Lus10035285.BGIv1.0 annot-version=v1.0 MGTELKSAWMILLFLFILPAMIPGSNGQLVRIPVKKRKLDNQLTPPAAKKYQLGNDVVVDLNNYLDAQYYGEIGVGSPPQTFKVVFDTGSSNLWVPSVKC HLSLACFIHSRYKSSRSSSYNKNGTSAKISYGSGSVSGFFSQDSVTVGDIVVENQDFIEATKEPIATFLAAKFDGILGLGFQEFSVENAVPLWYNMVNQD LVKDPIFSFWLNRNAEGEEGGEIVFGGVDSDHYKGKHTFVPLTQKGYWQFDIGDVWIGNQSVSGNCAGSCSAIADSGTSMLAGPTSVIAEINHVIGATGT VSQECKSVVSLYGRTILELLLADVLPHEICSQIGICLVDGNYSVSMDIKSVVDKTKTDGLDNALCTACEMAVVWIENRLKLNETAEQILKYIDEANAQST VECSSIPSLPVVSFTIGGKDFDLAPEEYILKVGNGITAQCISGFSAFDVPPPRGPLWVLGDVFMGRYHTVFDYENLKIGFALAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10035285 [exp]	0	1
AT4G19670			RING/U-box superfamily protein...		Lus10036202 [exp]	2.0	0.8795
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Lus10041543 [exp]	2.8	0.8829
AT3G18140			Transducin/WD40 repeat-like su...		Lus10042333 [exp]	5.5	0.8641
AT4G32250			Protein kinase superfamily pro...		Lus10001499 [exp]	7.5	0.8657
AT1G13990			unknown protein		Lus10036787 [exp]	11.2	0.8473
AT3G59910			Ankyrin repeat family protein ...		Lus10010581 [exp]	12.2	0.8374
AT5G53350		CLPX	CLP protease regulatory subuni...		Lus10036701 [exp]	12.6	0.8664
AT3G49490			unknown protein		Lus10015581 [exp]	12.7	0.8431
AT3G14205			Phosphoinositide phosphatase f...		Lus10037446 [exp]	12.7	0.8486
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10027139 [exp]	14.4	0.8240

Compare expression of checked genes

Lus10035285 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.