Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62300 263 / 6e-81 WRKY ATWRKY6, WRKY6 WRKY family transcription factor (.1) AT4G04450 245 / 2e-74 WRKY ATWRKY42, WRKY42 WRKY family transcription factor (.1) AT4G22070 234 / 8e-70 WRKY ATWRKY31, WRKY31 WRKY DNA-binding protein 31 (.1) AT4G01720 166 / 5e-45 WRKY ATWRKY47, WRKY47 WRKY family transcription factor (.1) AT1G68150 145 / 2e-38 WRKY ATWRKY9, WRKY9 WRKY DNA-binding protein 9 (.1) AT1G18860 145 / 7e-38 WRKY ATWRKY61, WRKY61 WRKY DNA-binding protein 61 (.1) AT5G15130 144 / 5e-37 WRKY ATWRKY72, WRKY72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) AT1G69810 120 / 9e-30 WRKY ATWRKY36, WRKY36 WRKY DNA-binding protein 36 (.1) AT4G31800 100 / 4e-23 WRKY ATWRKY18, WRKY18 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY DNA-binding protein 18 (.1.2) AT4G26640 101 / 1e-22 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021554 [exp] 211 / 4e-61 AT1G62300 293 / 1e-92 WRKY family transcription factor (.1) Lus10015546 [exp] 203 / 4e-60 AT4G04450 264 / 5e-84 WRKY family transcription factor (.1) Lus10022959 [exp] 206 / 2e-59 AT1G62300 300 / 3e-95 WRKY family transcription factor (.1) Lus10030040 [exp] 171 / 3e-57 AT1G62300 224 / 2e-96 WRKY family transcription factor (.1) Lus10038028 [exp] 180 / 9e-51 AT4G04450 247 / 3e-76 WRKY family transcription factor (.1) Lus10023615 [exp] 142 / 3e-36 AT5G15130 244 / 1e-73 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10024246 [exp] 142 / 8e-36 AT5G15130 257 / 2e-76 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10035971 [exp] 139 / 9e-36 AT1G68150 206 / 3e-62 WRKY DNA-binding protein 9 (.1) Lus10037205 [exp] 138 / 3e-35 AT5G15130 225 / 2e-67 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G155100 [exp] 319 / 1e-101 AT1G62300 310 / 6e-98 WRKY family transcription factor (.1) Potri.002G228400 [exp] 305 / 3e-96 AT1G62300 337 / 2e-108 WRKY family transcription factor (.1) Potri.004G007500 [exp] 297 / 3e-93 AT4G04450 419 / 8e-141 WRKY family transcription factor (.1) Potri.011G007800 [exp] 260 / 3e-79 AT1G62300 391 / 1e-129 WRKY family transcription factor (.1) Potri.014G111900 [exp] 201 / 9e-58 AT4G01720 298 / 1e-95 WRKY family transcription factor (.1) Potri.002G186600 [exp] 194 / 1e-55 AT4G01720 281 / 4e-89 WRKY family transcription factor (.1) Potri.017G079500 [exp] 150 / 4e-39 AT5G15130 284 / 6e-89 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.015G064100 [exp] 146 / 2e-37 AT5G15130 244 / 1e-72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.001G208600 [exp] 145 / 2e-37 AT1G68150 210 / 5e-63 WRKY DNA-binding protein 9 (.1) Potri.018G019700 [exp] 107 / 5e-26 AT1G80840 137 / 9e-39 WRKY DNA-binding protein 40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10035286 pacid=23170669 polypeptide=Lus10035286 locus=Lus10035286.g ID=Lus10035286.BGIv1.0 annot-version=v1.0 ATGGCCAGGAGCAGCACCAGGAGTGGACTCTCCATTGATTCGCCAGATCTCCTCACTGCTCCTTCTACTACAACTACTACTACTCTCCCTAGTCATACCC GATCTCTTCCGGCGGCTTCTACGACGACTTCCTCATCCTGCCGCTTCCTGTTCTCCGTAGGCCAGGCTCCCACAGTCCTCAACTCCCTCCCTCTCATGGA CTCCTCCTCCTCCCCCGCTACTGAGATCAGCGCTCACCCCACCACAATTCAATTCGTCGATGACGGCGGCGGTGCTGACGGTGGTGGTGGAGGTGGAGGT GGAGGTGGAGGTGCTTGTCATCTTGTTCATCACCGGCGGAAGGTGATTGATGAGATGGACTTCTTCGCGCAGAGGAATAATAATAATAGCGACAGCGTCG ATCTGATGAGTGTTGATTCCGATCGTCGCGATGGATTGGAATTGAAAGTTAACACGGGATTGAATCTGCTGACGAGGAATACGAGCAGCGAGCAGTCGAT TGTAGACGATGGCGGCGGGACATCGTCGACTAACGCGGACGATAGAAGGCTGAAAACAGAGCTACGCGGCGCTGCAGATGCAGAAACCCGAGACGAGGCG TCGGCAGCCGCGGCGGTTGATGGAGACAGTAAGAAAGCGATCGTTGAGAGAGAGGAGAGTCCCGATCAAGGCGGCGGAGGAGCAGGAGGAGGAGGATGGG CCGGAGGAGCGAGTAATAAGGTTGCGAGGTTTAACGGTTCGCCAAACAAGAGCGTCGATCAGACGGAGGCTACGATCAGGAAGGCTCGTGTGTCGGTTCG TGCTAGATCGGAAGCTCCCATGATTACTGATGGATGTCAATGGCGGAAGTATGGTCAGAAAATGGCTAAGGGAAATCCTTGTCCTCGCGCTTACTATCGC TGCACCATGGCTACTGGCTGCCCCGTCCGCAAACAGGTGCAAAGGTGCGCCGAGGACCGTACAGTACTGATAACAACCTACGAAGGGACACACAACCACC CGCTACCACCGGCGGCGATGGCGATGGCGTCGACAACCTCATCGGCAGCGAGGATGCTTCTCTCGGGATCCATGTCCAGTACCGACGGACTAATGAACTC CAATTTCCTCACCAGAACTCTCCTCCCATGTTCTTCAAGCATGGCCACAATCTCAGCTTCAGCTCCTTTCCCAACTGTTACATTGGACCTAACCCAAACC CCAAACCCATTAACCGGCCTCCAACGACCACCGCCGAACCACCAAATCCAGCTCCCCTTCCCGACCACCGCCAACCAGTCTCCGGCGGCCGCCGCCGCCG CATTGCTCCCTCAGCTTTTCGGCCAAGCGCTGCACAACCAGTCCAAATTCTCCGGCTTGCAAATGTCCCAAGATATCGACCACAACGCTGCTGCTGCTTC CTTATTCAGCCATGCCATACAAGGCGGTGGTTCCGGCGGAGGAGGAGGAGTGGGAGGGCAAAACCAGTTGGCTGATACGGCGGCAGCCATTGCAGCTGAC CCCAACTTCACGGCAGCTCTTGTGGCGGCGATCAGCTCAATAATCGGCGGTGGCGGTGGTCAGCCGAATGGTAATGGGAATAATAGTAACAATAATGGTT CAACCAGCAACGGCAATGGAGTGATGAAAACAAGGCAATAA
AA sequence Show only first row Show all	>Lus10035286 pacid=23170669 polypeptide=Lus10035286 locus=Lus10035286.g ID=Lus10035286.BGIv1.0 annot-version=v1.0 MARSSTRSGLSIDSPDLLTAPSTTTTTTLPSHTRSLPAASTTTSSSCRFLFSVGQAPTVLNSLPLMDSSSSPATEISAHPTTIQFVDDGGGADGGGGGGG GGGGACHLVHHRRKVIDEMDFFAQRNNNNSDSVDLMSVDSDRRDGLELKVNTGLNLLTRNTSSEQSIVDDGGGTSSTNADDRRLKTELRGAADAETRDEA SAAAAVDGDSKKAIVEREESPDQGGGGAGGGGWAGGASNKVARFNGSPNKSVDQTEATIRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYR CTMATGCPVRKQVQRCAEDRTVLITTYEGTHNHPLPPAAMAMASTTSSAARMLLSGSMSSTDGLMNSNFLTRTLLPCSSSMATISASAPFPTVTLDLTQT PNPLTGLQRPPPNHQIQLPFPTTANQSPAAAAAALLPQLFGQALHNQSKFSGLQMSQDIDHNAAAASLFSHAIQGGGSGGGGGVGGQNQLADTAAAIAAD PNFTAALVAAISSIIGGGGGQPNGNGNNSNNNGSTSNGNGVMKTRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10035286 [exp]	0	1
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10022329 [exp]	2.4	0.9391
AT5G05340			Peroxidase superfamily protein...		Lus10029062 [exp]	9.4	0.9232
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Lus10016625 [exp]	11.1	0.9218
AT2G47130		AtSDR3	short-chain dehydrogenase/redu...		Lus10042181 [exp]	13.4	0.9168
AT3G55470			Calcium-dependent lipid-bindin...		Lus10023410 [exp]	13.5	0.9088
AT2G39650			Protein of unknown function (D...		Lus10023412 [exp]	15.5	0.8904
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10004163 [exp]	17.3	0.9102
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10002697 [exp]	17.9	0.9156
AT4G09670			Oxidoreductase family protein ...		Lus10005674 [exp]	18.9	0.9150
AT1G74790			catalytics (.1)		Lus10036662 [exp]	19.5	0.9021

Compare expression of checked genes

Lus10035286 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.