Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32520 401 / 6e-143 alpha/beta-Hydrolases superfamily protein (.1) AT1G35420 54 / 3e-08 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030039 [exp] 457 / 4e-165 AT2G32520 425 / 5e-153 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G155200 [exp] 432 / 1e-154 AT2G32520 409 / 4e-146 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01738 [flax] [poplar] DLH Dienelactone hydrolase family
Representative CDS sequence Show only first row Show all	>Lus10035287 pacid=23170526 polypeptide=Lus10035287 locus=Lus10035287.g ID=Lus10035287.BGIv1.0 annot-version=v1.0 ATGTCTACAGCTGCAATCTCACGATCACTCTCACTCTCCTTAGCATCATCTTCCGGAAGATTCACACTCGCCGCCAGAACCCACTTATCCTCTTCTCGGC TACAGGTTCGCGCCATGGCTGCCTCTGCTGCTGACCCCTTCAAGAAGATCCAAATCCAGAGGGAAGACAGTACCTTTGATGTGTACGTGGTTGGAAAAGA CGATGCTCCTGGGATCGTTGTGCTGCAAGAATGGTGGGGTGTGGATTTTGAGATCAAGAACCATGCCATCAAGATTTCTCAGCTCGAACCTGGATTCAAG GCACTTATACCAGACTTGTATCGCGGGAAGGTTGGTTTGGATACTGCTGAAGCTCAGCATTTGATGGATAATCTTGACTGGCAAGGTGCTATCAAGGATA TAAGTGCTTCGGTTAACTGGCTCAAGGCCAACGGTTCTAAGAAGGCTGGAGTGACTGGATTTTGCATGGGCGGTGCTTTGGCAATTGCAAGCTCTGTTTT GGTTCCTGAGATTGATGCAGCTGTGGCTTTCTACGGAGTTCCTTTACCTGAGCTTGCAGATCCTTCCCAAGCTAAGGCTCCAGTTCAGGCTCATTTCGGA GAGCTCGATAACTTTGTTGGCTTTTCCGATGTCACAGCAGCAAAAGCCTTAGAAGAAAAGCTGAAAGCAGCTGGAGTACCATCCGAGGTACATATCTATC CTGGGAATGCACATGCTTTCATGAACAGGTCTCCAGATGGTATCAAGAGGAGGAAATCCATGGGACTTCCTGATGAAGATGATGCTGCTGTTGAGCTAGC TTGGTCTCGTTTCAAATCGTGGATGGCACGTCACTTATCGTCGTAA
AA sequence Show only first row Show all	>Lus10035287 pacid=23170526 polypeptide=Lus10035287 locus=Lus10035287.g ID=Lus10035287.BGIv1.0 annot-version=v1.0 MSTAAISRSLSLSLASSSGRFTLAARTHLSSSRLQVRAMAASAADPFKKIQIQREDSTFDVYVVGKDDAPGIVVLQEWWGVDFEIKNHAIKISQLEPGFK ALIPDLYRGKVGLDTAEAQHLMDNLDWQGAIKDISASVNWLKANGSKKAGVTGFCMGGALAIASSVLVPEIDAAVAFYGVPLPELADPSQAKAPVQAHFG ELDNFVGFSDVTAAKALEEKLKAAGVPSEVHIYPGNAHAFMNRSPDGIKRRKSMGLPDEDDAAVELAWSRFKSWMARHLSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32520			alpha/beta-Hydrolases superfam...		Lus10035287 [exp]	0	1
AT5G01650			Tautomerase/MIF superfamily pr...		Lus10022681 [exp]	1.4	0.8653
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10023164 [exp]	3.7	0.7858
AT5G49550		BLOS2	BLOC subunit 2, unknown protei...		Lus10019163 [exp]	3.9	0.7968
AT5G64350		FKP12, ATFKBP12...	ARABIDOPSIS THALIANA FK506-BIN...		Lus10016586 [exp]	5.7	0.8073
AT5G16660			unknown protein		Lus10026866 [exp]	6.0	0.8519
AT2G39170			unknown protein		Lus10040608 [exp]	6.6	0.8035
AT5G55640			unknown protein		Lus10043162 [exp]	7.9	0.7795
AT5G47630		MTACP3	mitochondrial acyl carrier pro...		Lus10038782 [exp]	9.4	0.7442
AT3G06050		PRXIIF, ATPRXII...	peroxiredoxin IIF (.1)		Lus10041218 [exp]	9.8	0.7822
AT2G20540		MEF21	mitochondrial editing factor ...		Lus10022124 [exp]	11.6	0.6920

Compare expression of checked genes

Lus10035287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.