Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15440 439 / 2e-152 CYP74B2, HPL1 hydroperoxide lyase 1 (.1) AT5G42650 332 / 7e-109 CYP74A, AOS, DDE2 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) AT4G15396 64 / 1e-10 CYP702A6 "cytochrome P450, family 702, subfamily A, polypeptide 6", cytochrome P450, family 702, subfamily A, polypeptide 6 (.1) AT2G42850 64 / 1e-10 CYP718 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) AT2G27010 62 / 3e-10 CYP705A9 "cytochrome P450, family 705, subfamily A, polypeptide 9", cytochrome P450, family 705, subfamily A, polypeptide 9 (.1) AT4G15393 62 / 4e-10 CYP702A5 "cytochrome P450, family 702, subfamily A, polypeptide 5", cytochrome P450, family 702, subfamily A, polypeptide 5 (.1.2.3) AT1G12740 60 / 2e-09 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT2G23220 60 / 2e-09 CYP81D6 "cytochrome P450, family 81, subfamily D, polypeptide 6", cytochrome P450, family 81, subfamily D, polypeptide 6 (.1) AT2G23190 59 / 4e-09 CYP81D7 "cytochrome P450, family 81, subfamily D, polypeptide 7", cytochrome P450, family 81, subfamily D, polypeptide 7 (.1) AT5G36220 58 / 8e-09 CYP91A1, CYP81D1 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030033 [exp] 896 / 0 AT4G15440 442 / 7e-154 hydroperoxide lyase 1 (.1) Lus10030032 [exp] 803 / 0 AT4G15440 423 / 2e-146 hydroperoxide lyase 1 (.1) Lus10030029 [exp] 719 / 0 AT4G15440 481 / 3e-169 hydroperoxide lyase 1 (.1) Lus10031540 [exp] 664 / 0 AT4G15440 467 / 3e-163 hydroperoxide lyase 1 (.1) Lus10015138 [exp] 586 / 0 AT4G15440 378 / 2e-128 hydroperoxide lyase 1 (.1) Lus10018791 [exp] 332 / 8e-109 AT5G42650 615 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10035295 [exp] 313 / 6e-105 AT4G15440 253 / 4e-83 hydroperoxide lyase 1 (.1) Lus10035291 [exp] 298 / 2e-100 AT4G15440 169 / 2e-51 hydroperoxide lyase 1 (.1) Lus10021015 [exp] 293 / 5e-94 AT5G42650 468 / 7e-162 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G155800 [exp] 620 / 0 AT4G15440 507 / 6e-179 hydroperoxide lyase 1 (.1) Potri.002G130700 [exp] 330 / 9e-108 AT5G42650 693 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.014G038700 [exp] 319 / 8e-104 AT5G42650 658 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.009G109700 [exp] 303 / 8e-98 AT5G42650 479 / 2e-166 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G148900 [exp] 299 / 1e-96 AT5G42650 499 / 2e-174 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G149000 [exp] 298 / 4e-96 AT5G42650 492 / 3e-171 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G148600 [exp] 271 / 6e-86 AT5G42650 442 / 3e-152 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.001G270500 [exp] 80 / 6e-16 AT1G12740 443 / 1e-152 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270404 [exp] 79 / 2e-15 AT1G12740 443 / 9e-153 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270300 [exp] 78 / 2e-15 AT1G12740 437 / 2e-150 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10035289 pacid=23170622 polypeptide=Lus10035289 locus=Lus10035289.g ID=Lus10035289.BGIv1.0 annot-version=v1.0 ATGGCTCATTTACCAGCTACTCCTCCGTCCGCCGCCGCGCCGCTGAGGACCATCCCGGGATCGTACGGGTGGCCGGTGGTGGGTCCGATAGCGGACAGGC TGAACTACTTCTGGTTCCAGGGACCGGAGAAGTTCTTCAGGAAGAGGATGGAGAAGTACAAGTCGCCGGTTTTCCGTACCAACGTGCCGCCGACTTTCCC TTTCTTCTCCGGAGTGAATCCGAACGTGGTGATGGTTCTGGACTGCAAGTCGTACGCGCACTTGTTCGACACGGAGATCGCCGACAAGAAGGATACTTTG CTCGGAGACTTCATGCCTAGCGTGGGTTTCAATGGTGATCTTCGGATGTGTGCTTACCAGGATGTTTTGGAGCCTAAACATGCTCAGATAAAAAGGTACA TAATGGCGATCTTGAAACGTGGCACCAAGGTGTGGACTACGGAGCTGAAAGTCAACCTTGACGAGATGTGGACCACTCTCGAAGCCGACATCTCATCGAA AGGAAGTGCCGCGTTGTTCTCGCCACTTCAGCATTGCCTGCTGAAGCTGTTGCTCAAGTCCTACGTGGGAGCTGATGTGGCAGAAGCTGCTCCTGACCTC GCGAAATCCGGTCCCACCATCATCAACACATGGTTCGCGCTCCAGGTCCACCCGACGATCGCTATCAACGTCATCCAACCTCTCGAAGAGATTTTCATCC ATTCGTTCCGATATCCATCTTTCCTCGCTCGACCCGGGTACAACAAGCTCGCTAATTTCATCAAAACTCAAGGACATGACGTGGTGCAACTCGGGGTGAC CGAGTACGGACTCACCGAGGAAGAGGCTATTCACAATTTACTATTCGTTCTGGCCTTTAACTCATTCGAAGGATTTACCCTATTTATCCCCAAGCTACTG ACCCGGTTACTCAACGACTCGACCTTACAAGAGAAGCTTCGGGTCGAAGCGAGGCAGAACGGTGGGACCGACTTGACATTTGCCTCCTTTAAGCAAATGC CGTTGATCCAATCCTTTGTCTACGAGACACTCCGGCTCGAACCACCGGTTCCAACCCAGTTTGCCCGTGCTAGAAAGGATTTCACGCTCAACTCGAGCGA GGCATCGTATGAGATCAAGAAGGGCGAGCTTTTGTGCGGGTACCAGCCGTTGGTGATGCGTGACTCGACTATTTTCGACGACCCGGAGAGTTTCAAACCG GACCGGTTCCTGGGGGAGAAGGGGGCCGAGTTGTTGAATTACCTGTACTGGTCGAACGGGCCAGAGACCGGTTCAGCCAGCCATTCGAATAAACAGTGTG CGGGGAAAGAGTACGTGACCGTAACTGGGTCGTTGTTCGTGGCCCACTTGCTTCGACGGTATGATTCCATCAGTGGGGAAGGTTCGACGATCAAGGCCGT TGAAAAGGCTAAGTGA
AA sequence Show only first row Show all	>Lus10035289 pacid=23170622 polypeptide=Lus10035289 locus=Lus10035289.g ID=Lus10035289.BGIv1.0 annot-version=v1.0 MAHLPATPPSAAAPLRTIPGSYGWPVVGPIADRLNYFWFQGPEKFFRKRMEKYKSPVFRTNVPPTFPFFSGVNPNVVMVLDCKSYAHLFDTEIADKKDTL LGDFMPSVGFNGDLRMCAYQDVLEPKHAQIKRYIMAILKRGTKVWTTELKVNLDEMWTTLEADISSKGSAALFSPLQHCLLKLLLKSYVGADVAEAAPDL AKSGPTIINTWFALQVHPTIAINVIQPLEEIFIHSFRYPSFLARPGYNKLANFIKTQGHDVVQLGVTEYGLTEEEAIHNLLFVLAFNSFEGFTLFIPKLL TRLLNDSTLQEKLRVEARQNGGTDLTFASFKQMPLIQSFVYETLRLEPPVPTQFARARKDFTLNSSEASYEIKKGELLCGYQPLVMRDSTIFDDPESFKP DRFLGEKGAELLNYLYWSNGPETGSASHSNKQCAGKEYVTVTGSLFVAHLLRRYDSISGEGSTIKAVEKAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10035289 [exp]	0	1
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040271 [exp]	4.1	0.9271
AT1G67340			HCP-like superfamily protein w...		Lus10015784 [exp]	5.7	0.8950
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031237 [exp]	6.2	0.8966
AT1G73260		ATKTI1	ARABIDOPSIS THALIANA KUNITZ TR...		Lus10029429 [exp]	6.3	0.9164
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10019801 [exp]	7.5	0.8852
AT3G19615			unknown protein		Lus10042265 [exp]	7.7	0.9226
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004176 [exp]	12.0	0.8357
AT2G31945			unknown protein		Lus10039201 [exp]	14.1	0.9083
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10022015 [exp]	14.3	0.8790
					Lus10038520 [exp]	14.6	0.9179

Compare expression of checked genes

Lus10035289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.